Analysis of interatomic Contacts of Structural Units in PDB entry:
4JR4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JR4 entry

There are 2 chains in PDB entry 4JR4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 59SER 255
B
 ASP 59THR 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4JR4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
89 109Right-handed alpha
Helix 2
2
A
129 145Right-handed alpha
Helix 3
3
A
145 157Right-handed alpha
Helix 4
4
A
172 183Right-handed alpha
Helix 5
5
A
188 195Right-handed alpha
Helix 6
6
A
198 209Right-handed alpha
Helix 7
7
A
228 241Right-handed alpha
Helix 8
8
A
245 254Right-handed alpha
Helix 9
9
B
89 109Right-handed alpha
Helix 10
10
B
124 128Right-handed 310
Helix 11
11
B
129 145Right-handed alpha
Helix 12
12
B
145 157Right-handed alpha
Helix 13
13
B
172 183Right-handed alpha
Helix 14
14
B
188 196Right-handed alpha
Helix 15
15
B
198 209Right-handed alpha
Helix 16
16
B
228 241Right-handed alpha
Helix 17
17
B
245 252Right-handed alpha
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There are 2 sheets in PDB entry 4JR4. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
113 118anti-parallel
Strand 3
A
80 85parallel
Strand 4
A
216 219anti-parallel
Strand 5
A
222 223anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
113 119anti-parallel
Strand 3
B
80 86parallel
Strand 4
B
216 219anti-parallel
Strand 5
B
222 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il