Analysis of interatomic Contacts of Structural Units in PDB entry:
4JR9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JR9 entry

There are 3 chains in PDB entry 4JR9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12GLY 458
H
 GLN 1PRO 217
L
 ASP 1ASN 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4JR9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 29Right-handed alpha
Helix 2
2
A
29 53Right-handed alpha
Helix 3
3
A
54 57Right-handed 310
Helix 4
4
A
62 66Right-handed 310
Helix 5
5
A
70 80Right-handed alpha
Helix 6
6
A
80 100Right-handed alpha
Helix 7
7
A
100 111Right-handed alpha
Helix 8
8
A
112 123Right-handed alpha
Helix 9
9
A
129 141Right-handed alpha
Helix 10
10
A
142 144Right-handed 310
Helix 11
11
A
145 158Right-handed alpha
Helix 12
12
A
162 189Right-handed alpha
Helix 13
13
A
213 218Right-handed alpha
Helix 14
14
A
219 234Right-handed alpha
Helix 15
15
A
257 281Right-handed alpha
Helix 16
16
A
295 316Right-handed alpha
Helix 17
17
A
316 334Right-handed alpha
Helix 18
18
A
335 339Right-handed 310
Helix 19
19
A
347 389Right-handed alpha
Helix 20
20
A
391 415Right-handed alpha
Helix 21
21
A
416 432Right-handed alpha
Helix 22
22
A
435 457Right-handed alpha
Helix 23
23
H
28 32Right-handed 310
Helix 24
24
H
62 65Right-handed 310
Helix 25
25
H
87 91Right-handed 310
Helix 26
26
H
161 163Right-handed 310
Helix 27
27
H
205 208Right-handed 310
Helix 28
28
L
79 83Right-handed 310
Helix 29
29
L
120 125Right-handed alpha
Helix 30
30
L
182 188Right-handed alpha
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There are 11 sheets in PDB entry 4JR9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
236 237parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
107 108anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
125 129first strand
Strand 2
H
140 150anti-parallel
Strand 3
H
179 189anti-parallel
Strand 4
H
168 176anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 159first strand
Strand 2
H
199 204anti-parallel
Strand 3
H
209 214anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
101 106parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
101 106parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
96 97anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
113 117first strand
Strand 2
L
128 138anti-parallel
Strand 3
L
172 181anti-parallel
Strand 4
L
158 162anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
152 154first strand
Strand 2
L
144 149anti-parallel
Strand 3
L
190 196anti-parallel
Strand 4
L
204 209anti-parallel
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