Analysis of interatomic Contacts of Structural Units in PDB entry:
4JRB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JRB entry

There are 2 chains in PDB entry 4JRB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0PHE 64
A
 VAL 68PHE 1216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4JRB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 9Right-handed 310
Helix 2
2
A
56 61Right-handed 310
Helix 3
3
A
68 72Right-handed 310
Helix 4
4
A
75 81Right-handed 310
Helix 5
5
A
82 87Right-handed alpha
Helix 6
6
A
1035 1047Right-handed alpha
Helix 7
7
A
1048 1063Right-handed alpha
Helix 8
8
A
1063 1074Right-handed alpha
Helix 9
9
A
1075 1088Right-handed alpha
Helix 10
10
A
1088 1101Right-handed alpha
Helix 11
11
A
1104 1111Right-handed alpha
Helix 12
12
A
1134 1147Right-handed alpha
Helix 13
13
A
1148 1163Right-handed alpha
Helix 14
14
A
1163 1175Right-handed alpha
Helix 15
15
A
1175 1187Right-handed alpha
Helix 16
16
A
1188 1200Right-handed alpha
Helix 17
17
A
1204 1216Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4JRB.

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
217 227anti-parallel
Strand 5
A
199 208anti-parallel
Strand 6
A
148 155anti-parallel
Strand 7
A
160 170anti-parallel
Strand 8
A
176 187anti-parallel
Strand 9
A
92 100anti-parallel
Strand 10
A
105 115anti-parallel
Strand 11
A
118 128anti-parallel
Strand 12
A
12 22parallel
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