Analysis of interatomic Contacts of Structural Units in PDB entry:
4JRE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JRE entry

There are 6 chains in PDB entry 4JRE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 13	GLY 458
B	GLN 1	PRO 217
C	ASP 1	ASN 211
D	ALA 13	GLY 458
H	GLN 1	PRO 217
L	ASP 1	ASN 211

There are 67 helices in PDB entry 4JRE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	22	29	Right-handed alpha
Helix 2	2	A	29	53	Right-handed alpha
Helix 3	3	A	54	62	Right-handed alpha
Helix 4	4	A	63	66	Right-handed 310
Helix 5	5	A	70	80	Right-handed alpha
Helix 6	6	A	80	94	Right-handed alpha
Helix 7	7	A	95	100	Right-handed alpha
Helix 8	8	A	100	111	Right-handed alpha
Helix 9	9	A	112	122	Right-handed alpha
Helix 10	10	A	129	141	Right-handed alpha
Helix 11	11	A	142	144	Right-handed 310
Helix 12	12	A	145	158	Right-handed alpha
Helix 13	13	A	159	161	Right-handed 310
Helix 14	14	A	162	185	Right-handed alpha
Helix 15	15	A	213	218	Right-handed alpha
Helix 16	16	A	219	234	Right-handed alpha
Helix 17	17	A	257	276	Right-handed alpha
Helix 18	18	A	290	295	Right-handed alpha
Helix 19	19	A	295	316	Right-handed alpha
Helix 20	20	A	316	334	Right-handed alpha
Helix 21	21	A	335	339	Right-handed 310
Helix 22	22	A	347	389	Right-handed alpha
Helix 23	23	A	391	415	Right-handed alpha
Helix 24	24	A	416	433	Right-handed alpha
Helix 25	25	A	435	455	Right-handed alpha
Helix 26	26	B	28	32	Right-handed 310
Helix 27	27	B	62	65	Right-handed 310
Helix 28	28	B	87	91	Right-handed 310
Helix 29	29	B	161	163	Right-handed 310
Helix 30	30	B	191	193	Right-handed 310
Helix 31	31	B	205	208	Right-handed 310
Helix 32	32	C	79	83	Right-handed 310
Helix 33	33	C	120	126	Right-handed alpha
Helix 34	34	C	182	188	Right-handed alpha
Helix 35	35	D	22	29	Right-handed alpha
Helix 36	36	D	29	53	Right-handed alpha
Helix 37	37	D	54	59	Right-handed alpha
Helix 38	38	D	62	66	Right-handed 310
Helix 39	39	D	70	80	Right-handed alpha
Helix 40	40	D	80	94	Right-handed alpha
Helix 41	41	D	94	100	Right-handed alpha
Helix 42	42	D	100	111	Right-handed alpha
Helix 43	43	D	112	123	Right-handed alpha
Helix 44	44	D	129	141	Right-handed alpha
Helix 45	45	D	141	158	Right-handed alpha
Helix 46	46	D	162	176	Right-handed alpha
Helix 47	47	D	176	189	Right-handed alpha
Helix 48	48	D	212	218	Right-handed alpha
Helix 49	49	D	219	234	Right-handed alpha
Helix 50	50	D	257	284	Right-handed alpha
Helix 51	51	D	289	294	Right-handed 310
Helix 52	52	D	295	316	Right-handed alpha
Helix 53	53	D	316	334	Right-handed alpha
Helix 54	54	D	335	339	Right-handed 310
Helix 55	55	D	349	389	Right-handed alpha
Helix 56	56	D	391	414	Right-handed alpha
Helix 57	57	D	416	432	Right-handed alpha
Helix 58	58	D	435	457	Right-handed alpha
Helix 59	59	H	28	32	Right-handed 310
Helix 60	60	H	62	65	Right-handed 310
Helix 61	61	H	87	91	Right-handed 310
Helix 62	62	H	161	163	Right-handed 310
Helix 63	63	H	191	193	Right-handed 310
Helix 64	64	H	205	208	Right-handed 310
Helix 65	65	L	79	83	Right-handed 310
Helix 66	66	L	120	125	Right-handed alpha
Helix 67	67	L	182	188	Right-handed alpha

There are 21 sheets in PDB entry 4JRE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	236	237	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	112	116	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	112	116	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	107	108	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	140	150	anti-parallel
Strand 3	B	179	189	anti-parallel
Strand 4	B	168	176	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	199	204	anti-parallel
Strand 3	B	209	214	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	101	106	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	101	106	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	96	97	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	117	first strand
Strand 2	C	128	138	anti-parallel
Strand 3	C	172	181	anti-parallel
Strand 4	C	158	162	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	154	first strand
Strand 2	C	144	149	anti-parallel
Strand 3	C	190	196	anti-parallel
Strand 4	C	204	209	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	236	237	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	179	189	anti-parallel
Strand 4	H	168	176	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	199	204	anti-parallel
Strand 3	H	209	214	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	101	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	101	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	154	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	190	196	anti-parallel
Strand 4	L	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JRE

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JRE