Analysis of interatomic Contacts of Structural Units in PDB entry:
4JRF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JRF entry

There is 1 chain in PDB entry 4JRF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 36GLN 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 4JRF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 68Right-handed 310
Helix 2
2
A
90 94Right-handed 310
Helix 3
3
A
127 134Right-handed alpha
Helix 4
4
A
139 144Right-handed alpha
Helix 5
5
A
150 156Right-handed alpha
Helix 6
6
A
172 176Right-handed 310
Helix 7
7
A
193 203Right-handed alpha
Helix 8
8
A
273 277Right-handed 310
Helix 9
9
A
278 280Right-handed 310
Helix 10
10
A
312 316Right-handed 310
Helix 11
11
A
351 365Right-handed alpha
Helix 12
12
A
369 394Right-handed alpha
Helix 13
13
A
400 404Right-handed 310
Helix 14
14
A
405 411Right-handed alpha
Helix 15
15
A
414 420Right-handed 310
Helix 16
16
A
422 426Right-handed 310
Helix 17
17
A
498 502Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 4JRF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
40 42anti-parallel
Strand 3
A
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 88first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
164 166anti-parallel
Strand 5
A
206 212anti-parallel
Strand 6
A
44 47parallel
Strand 7
A
95 98parallel
Strand 8
A
101 102anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 88first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
179 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
247 248anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 307first strand
Strand 2
A
214 221anti-parallel
Strand 3
A
466 475parallel
Strand 4
A
506 514anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 242first strand
Strand 2
A
323 331anti-parallel
Strand 3
A
438 444anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
282 283anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
266 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
341 344anti-parallel
Strand 3
A
432 434anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il