Analysis of interatomic Contacts of Structural Units in PDB entry:
4JRL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JRL entry

There is 1 chain in PDB entry 4JRL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 28GLU 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4JRL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 64Right-handed 310
Helix 2
2
A
162 168Right-handed alpha
Helix 3
3
A
174 178Right-handed 310
Helix 4
4
A
199 206Right-handed alpha
Helix 5
5
A
222 225Right-handed 310
Helix 6
6
A
228 232Right-handed alpha
Helix 7
7
A
306 310Right-handed 310
Helix 8
8
A
332 338Right-handed alpha
Helix 9
9
A
352 355Right-handed 310
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There are 10 sheets in PDB entry 4JRL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
66 69anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
113 122parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
75 78anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
113 122parallel
Strand 4
A
154 158parallel
Strand 5
A
142 146anti-parallel
Strand 6
A
131 132anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
363 373anti-parallel
Strand 3
A
191 195anti-parallel
Strand 4
A
180 183anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
363 373anti-parallel
Strand 3
A
243 253anti-parallel
Strand 4
A
317 322anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
210 211anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
341 348anti-parallel
Strand 3
A
237 238anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
341 348anti-parallel
Strand 3
A
273 280anti-parallel
Strand 4
A
299 304anti-parallel
Strand 5
A
324 325anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 220first strand
Strand 2
A
233 235anti-parallel
Strand 3
A
288 289anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
258 260anti-parallel
Strand 3
A
357 359anti-parallel
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