Analysis of interatomic Contacts of Structural Units in PDB entry:
4JRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JRM entry

There are 4 chains in PDB entry 4JRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 LYS 3MET 414
A
 LYS 3MET 414
B
 LYS 3MET 414
C
 SER 2MET 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 4JRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
20 30Right-handed alpha
Helix 2
2
D
58 62Right-handed 310
Helix 3
3
D
64 69Right-handed alpha
Helix 4
4
D
72 90Right-handed alpha
Helix 5
5
D
97 99Right-handed 310
Helix 6
6
D
111 126Right-handed alpha
Helix 7
7
D
127 130Right-handed 310
Helix 8
8
D
133 139Right-handed alpha
Helix 9
9
D
141 152Right-handed alpha
Helix 10
10
D
162 164Right-handed 310
Helix 11
11
D
165 181Right-handed alpha
Helix 12
12
D
196 206Right-handed alpha
Helix 13
13
D
215 220Right-handed alpha
Helix 14
14
D
244 250Right-handed alpha
Helix 15
15
D
277 292Right-handed alpha
Helix 16
16
D
294 296Right-handed 310
Helix 17
17
D
308 331Right-handed alpha
Helix 18
18
D
336 341Right-handed alpha
Helix 19
19
D
343 345Right-handed 310
Helix 20
20
D
346 362Right-handed alpha
Helix 21
21
A
20 30Right-handed alpha
Helix 22
22
A
58 62Right-handed 310
Helix 23
23
A
64 69Right-handed alpha
Helix 24
24
A
72 90Right-handed alpha
Helix 25
25
A
97 99Right-handed 310
Helix 26
26
A
111 126Right-handed alpha
Helix 27
27
A
127 130Right-handed 310
Helix 28
28
A
133 139Right-handed alpha
Helix 29
29
A
141 152Right-handed alpha
Helix 30
30
A
162 164Right-handed 310
Helix 31
31
A
165 181Right-handed alpha
Helix 32
32
A
196 206Right-handed alpha
Helix 33
33
A
215 219Right-handed 310
Helix 34
34
A
244 251Right-handed alpha
Helix 35
35
A
277 292Right-handed alpha
Helix 36
36
A
294 296Right-handed 310
Helix 37
37
A
308 331Right-handed alpha
Helix 38
38
A
336 341Right-handed alpha
Helix 39
39
A
343 345Right-handed 310
Helix 40
40
A
346 362Right-handed alpha
Helix 41
41
B
20 30Right-handed alpha
Helix 42
42
B
58 62Right-handed 310
Helix 43
43
B
64 69Right-handed alpha
Helix 44
44
B
72 90Right-handed alpha
Helix 45
45
B
97 99Right-handed 310
Helix 46
46
B
111 126Right-handed alpha
Helix 47
47
B
127 130Right-handed 310
Helix 48
48
B
133 139Right-handed alpha
Helix 49
49
B
141 152Right-handed alpha
Helix 50
50
B
162 164Right-handed 310
Helix 51
51
B
165 181Right-handed alpha
Helix 52
52
B
196 206Right-handed alpha
Helix 53
53
B
215 219Right-handed 310
Helix 54
54
B
244 250Right-handed alpha
Helix 55
55
B
277 292Right-handed alpha
Helix 56
56
B
294 296Right-handed 310
Helix 57
57
B
308 331Right-handed alpha
Helix 58
58
B
336 341Right-handed alpha
Helix 59
59
B
343 345Right-handed 310
Helix 60
60
B
346 362Right-handed alpha
Helix 61
61
C
20 30Right-handed alpha
Helix 62
62
C
58 62Right-handed 310
Helix 63
63
C
64 69Right-handed alpha
Helix 64
64
C
72 90Right-handed alpha
Helix 65
65
C
97 99Right-handed 310
Helix 66
66
C
111 126Right-handed alpha
Helix 67
67
C
127 130Right-handed 310
Helix 68
68
C
133 139Right-handed alpha
Helix 69
69
C
141 152Right-handed alpha
Helix 70
70
C
162 164Right-handed 310
Helix 71
71
C
165 181Right-handed alpha
Helix 72
72
C
196 206Right-handed alpha
Helix 73
73
C
215 220Right-handed alpha
Helix 74
74
C
244 251Right-handed alpha
Helix 75
75
C
277 292Right-handed alpha
Helix 76
76
C
294 296Right-handed 310
Helix 77
77
C
308 323Right-handed alpha
Helix 78
78
C
324 327Right-handed 310
Helix 79
79
C
336 341Right-handed alpha
Helix 80
80
C
343 345Right-handed 310
Helix 81
81
C
346 362Right-handed alpha
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There are 12 sheets in PDB entry 4JRM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
157 158first strand
Strand 2
D
101 106parallel
Strand 3
D
185 192parallel
Strand 4
D
235 243anti-parallel
Strand 5
D
6 14anti-parallel
Strand 6
D
256 265anti-parallel
Strand 7
D
405 413anti-parallel
Strand 8
D
394 401anti-parallel
Strand 9
D
298 302parallel
Strand 10
D
332 334parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 37first strand
Strand 2
D
50 52anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
363 364first strand
Strand 2
D
387 388anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
101 106parallel
Strand 3
A
185 192parallel
Strand 4
A
235 243anti-parallel
Strand 5
A
6 14anti-parallel
Strand 6
A
256 265anti-parallel
Strand 7
A
405 413anti-parallel
Strand 8
A
394 401anti-parallel
Strand 9
A
298 302parallel
Strand 10
A
332 334parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
50 52anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
387 388anti-parallel
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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 158first strand
Strand 2
B
101 106parallel
Strand 3
B
185 192parallel
Strand 4
B
235 243anti-parallel
Strand 5
B
6 14anti-parallel
Strand 6
B
256 265anti-parallel
Strand 7
B
405 413anti-parallel
Strand 8
B
394 401anti-parallel
Strand 9
B
298 302parallel
Strand 10
B
332 334parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
50 52anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 364first strand
Strand 2
B
387 388anti-parallel
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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 158first strand
Strand 2
C
101 106parallel
Strand 3
C
185 192parallel
Strand 4
C
235 243anti-parallel
Strand 5
C
6 14anti-parallel
Strand 6
C
256 265anti-parallel
Strand 7
C
405 412anti-parallel
Strand 8
C
394 401anti-parallel
Strand 9
C
298 302parallel
Strand 10
C
332 334parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 37first strand
Strand 2
C
50 52anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
363 364first strand
Strand 2
C
387 388anti-parallel
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