Analysis of interatomic Contacts of Structural Units in PDB entry:
4JRN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JRN entry

There is 1 chain in PDB entry 4JRN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 187GLN 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4JRN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
196 209Right-handed alpha
Helix 2
2
A
220 231Right-handed alpha
Helix 3
3
A
290 297Right-handed alpha
Helix 4
4
A
303 307Right-handed 310
Helix 5
5
A
312 319Right-handed alpha
Helix 6
6
A
363 372Right-handed alpha
Helix 7
7
A
373 378Right-handed alpha
Helix 8
8
A
379 403Right-handed alpha
Helix 9
9
A
411 413Right-handed 310
Helix 10
10
A
427 431Right-handed 310
Helix 11
11
A
461 479Right-handed alpha
Helix 12
12
A
483 487Right-handed 310
Helix 13
13
A
501 512Right-handed alpha
Helix 14
14
A
521 526Right-handed alpha
Helix 15
15
A
528 547Right-handed alpha
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There are 5 sheets in PDB entry 4JRN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
249 260anti-parallel
Strand 3
A
264 271anti-parallel
Strand 4
A
277 283anti-parallel
Strand 5
A
353 357anti-parallel
Strand 6
A
327 331anti-parallel
Strand 7
A
239 243anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 342first strand
Strand 2
A
345 350anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
415 417anti-parallel
Strand 3
A
423 425anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
432 433anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 438first strand
Strand 2
A
458 460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il