Analysis of interatomic Contacts of Structural Units in PDB entry:
4JRO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JRO entry

There are 4 chains in PDB entry 4JRO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 247
B
 MET 1MET 247
C
 MET 1MET 247
D
 MET 1MET 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 4JRO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
40 52Right-handed alpha
Helix 3
3
A
66 82Right-handed alpha
Helix 4
4
A
98 102Right-handed 310
Helix 5
5
A
103 115Right-handed alpha
Helix 6
6
A
115 133Right-handed alpha
Helix 7
7
A
143 148Right-handed alpha
Helix 8
8
A
152 174Right-handed alpha
Helix 9
9
A
192 196Right-handed 310
Helix 10
10
A
197 206Right-handed alpha
Helix 11
11
A
215 228Right-handed alpha
Helix 12
12
A
229 232Right-handed 310
Helix 13
13
B
15 28Right-handed alpha
Helix 14
14
B
39 52Right-handed alpha
Helix 15
15
B
66 82Right-handed alpha
Helix 16
16
B
98 102Right-handed 310
Helix 17
17
B
103 115Right-handed alpha
Helix 18
18
B
115 133Right-handed alpha
Helix 19
19
B
143 148Right-handed alpha
Helix 20
20
B
152 174Right-handed alpha
Helix 21
21
B
202 207Right-handed alpha
Helix 22
22
B
215 228Right-handed alpha
Helix 23
23
B
229 232Right-handed 310
Helix 24
24
C
15 28Right-handed alpha
Helix 25
25
C
39 52Right-handed alpha
Helix 26
26
C
66 82Right-handed alpha
Helix 27
27
C
98 102Right-handed 310
Helix 28
28
C
103 115Right-handed alpha
Helix 29
29
C
115 133Right-handed alpha
Helix 30
30
C
143 148Right-handed alpha
Helix 31
31
C
152 174Right-handed alpha
Helix 32
32
C
190 195Right-handed alpha
Helix 33
33
C
197 207Right-handed alpha
Helix 34
34
C
215 228Right-handed alpha
Helix 35
35
C
229 232Right-handed 310
Helix 36
36
D
15 28Right-handed alpha
Helix 37
37
D
39 52Right-handed alpha
Helix 38
38
D
66 82Right-handed alpha
Helix 39
39
D
98 102Right-handed 310
Helix 40
40
D
103 115Right-handed alpha
Helix 41
41
D
115 133Right-handed alpha
Helix 42
42
D
143 148Right-handed alpha
Helix 43
43
D
152 174Right-handed alpha
Helix 44
44
D
199 206Right-handed alpha
Helix 45
45
D
215 228Right-handed alpha
Helix 46
46
D
229 232Right-handed 310
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There are 4 sheets in PDB entry 4JRO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
31 36parallel
Strand 3
A
7 11parallel
Strand 4
A
86 89parallel
Strand 5
A
135 140parallel
Strand 6
A
178 185parallel
Strand 7
A
238 241parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
31 36parallel
Strand 3
B
7 10parallel
Strand 4
B
86 89parallel
Strand 5
B
135 140parallel
Strand 6
B
178 185parallel
Strand 7
B
238 241parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 61first strand
Strand 2
C
31 36parallel
Strand 3
C
7 10parallel
Strand 4
C
86 89parallel
Strand 5
C
135 140parallel
Strand 6
C
178 185parallel
Strand 7
C
238 241parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 61first strand
Strand 2
D
31 36parallel
Strand 3
D
7 11parallel
Strand 4
D
86 89parallel
Strand 5
D
135 140parallel
Strand 6
D
178 185parallel
Strand 7
D
238 241parallel
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