Analysis of interatomic Contacts of Structural Units in PDB entry:
4JRP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JRP entry

There are 4 chains in PDB entry 4JRP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 T 1 T 13
D
 T 1 T 13
A
 GLN 7VAL 475
B
 GLN 7VAL 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 4JRP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 68Right-handed alpha
Helix 2
2
A
70 78Right-handed alpha
Helix 3
3
A
80 93Right-handed alpha
Helix 4
4
A
107 119Right-handed alpha
Helix 5
5
A
124 132Right-handed 310
Helix 6
6
A
136 148Right-handed alpha
Helix 7
7
A
165 172Right-handed alpha
Helix 8
8
A
182 201Right-handed alpha
Helix 9
9
A
201 211Right-handed alpha
Helix 10
10
A
213 219Right-handed alpha
Helix 11
11
A
234 241Right-handed 310
Helix 12
12
A
268 274Right-handed alpha
Helix 13
13
A
275 284Right-handed alpha
Helix 14
14
A
313 315Right-handed 310
Helix 15
15
A
316 324Right-handed alpha
Helix 16
16
A
326 339Right-handed alpha
Helix 17
17
A
341 351Right-handed alpha
Helix 18
18
A
362 370Right-handed 310
Helix 19
19
A
373 386Right-handed alpha
Helix 20
20
A
387 394Right-handed 310
Helix 21
21
A
401 415Right-handed alpha
Helix 22
22
A
416 419Right-handed 310
Helix 23
23
A
420 435Right-handed alpha
Helix 24
24
A
436 454Right-handed alpha
Helix 25
25
A
457 475Right-handed alpha
Helix 26
26
B
60 68Right-handed alpha
Helix 27
27
B
70 78Right-handed alpha
Helix 28
28
B
80 93Right-handed alpha
Helix 29
29
B
103 106Right-handed 310
Helix 30
30
B
107 119Right-handed alpha
Helix 31
31
B
124 132Right-handed 310
Helix 32
32
B
136 148Right-handed alpha
Helix 33
33
B
165 173Right-handed alpha
Helix 34
34
B
183 201Right-handed alpha
Helix 35
35
B
201 211Right-handed alpha
Helix 36
36
B
213 219Right-handed alpha
Helix 37
37
B
234 241Right-handed 310
Helix 38
38
B
268 274Right-handed alpha
Helix 39
39
B
275 284Right-handed alpha
Helix 40
40
B
304 306Right-handed 310
Helix 41
41
B
313 315Right-handed 310
Helix 42
42
B
316 324Right-handed alpha
Helix 43
43
B
326 340Right-handed alpha
Helix 44
44
B
340 352Right-handed alpha
Helix 45
45
B
362 370Right-handed 310
Helix 46
46
B
373 386Right-handed alpha
Helix 47
47
B
387 389Right-handed 310
Helix 48
48
B
390 395Right-handed alpha
Helix 49
49
B
401 415Right-handed alpha
Helix 50
50
B
416 419Right-handed 310
Helix 51
51
B
420 435Right-handed alpha
Helix 52
52
B
436 454Right-handed alpha
Helix 53
53
B
457 474Right-handed alpha
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There are 4 sheets in PDB entry 4JRP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
28 37anti-parallel
Strand 3
A
10 18anti-parallel
Strand 4
A
97 100parallel
Strand 5
A
133 134parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 302first strand
Strand 2
A
258 263anti-parallel
Strand 3
A
243 251anti-parallel
Strand 4
A
229 232anti-parallel
Strand 5
A
308 311anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 50first strand
Strand 2
B
28 37anti-parallel
Strand 3
B
10 18anti-parallel
Strand 4
B
97 100parallel
Strand 5
B
133 134parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 302first strand
Strand 2
B
258 263anti-parallel
Strand 3
B
243 251anti-parallel
Strand 4
B
229 232anti-parallel
Strand 5
B
308 311anti-parallel
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