Analysis of interatomic Contacts of Structural Units in PDB entry:
4JRR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JRR entry

There are 3 chains in PDB entry 4JRR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 29SER 216
B
 PHE 34ALA 217
C
 GLN 33ALA 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4JRR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 55Right-handed 310
Helix 2
2
A
66 84Right-handed alpha
Helix 3
3
A
85 87Right-handed 310
Helix 4
4
A
99 113Right-handed alpha
Helix 5
5
A
115 129Right-handed alpha
Helix 6
6
A
136 147Right-handed alpha
Helix 7
7
A
150 160Right-handed alpha
Helix 8
8
A
161 178Right-handed alpha
Helix 9
9
A
196 200Right-handed alpha
Helix 10
10
A
201 214Right-handed alpha
Helix 11
11
B
66 83Right-handed alpha
Helix 12
12
B
99 113Right-handed alpha
Helix 13
13
B
115 129Right-handed alpha
Helix 14
14
B
136 147Right-handed alpha
Helix 15
15
B
150 160Right-handed alpha
Helix 16
16
B
161 178Right-handed alpha
Helix 17
17
B
196 200Right-handed alpha
Helix 18
18
B
201 216Right-handed alpha
Helix 19
19
C
66 84Right-handed alpha
Helix 20
20
C
85 87Right-handed 310
Helix 21
21
C
99 113Right-handed alpha
Helix 22
22
C
115 129Right-handed alpha
Helix 23
23
C
136 147Right-handed alpha
Helix 24
24
C
150 160Right-handed alpha
Helix 25
25
C
161 178Right-handed alpha
Helix 26
26
C
196 200Right-handed alpha
Helix 27
27
C
201 216Right-handed alpha
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There are 4 sheets in PDB entry 4JRR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
C
182 183anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
192 195anti-parallel
Strand 3
A
185 188anti-parallel
Strand 4
A
57 62anti-parallel
Strand 5
A
88 93parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
192 195anti-parallel
Strand 3
B
185 188anti-parallel
Strand 4
B
57 62anti-parallel
Strand 5
B
88 93parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 42first strand
Strand 2
C
192 195anti-parallel
Strand 3
C
185 188anti-parallel
Strand 4
C
57 62anti-parallel
Strand 5
C
88 93parallel
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