Analysis of interatomic Contacts of Structural Units in PDB entry:
4JSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JSD entry

There is 1 chain in PDB entry 4JSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1THR 582
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4JSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 5Right-handed 310
Helix 2
2
A
31 36Right-handed alpha
Helix 3
3
A
83 98Right-handed alpha
Helix 4
4
A
104 108Right-handed alpha
Helix 5
5
A
130 140Right-handed alpha
Helix 6
6
A
145 156Right-handed alpha
Helix 7
7
A
157 161Right-handed 310
Helix 8
8
A
165 169Right-handed 310
Helix 9
9
A
195 200Right-handed alpha
Helix 10
10
A
214 224Right-handed alpha
Helix 11
11
A
238 243Right-handed alpha
Helix 12
12
A
277 288Right-handed alpha
Helix 13
13
A
289 297Right-handed alpha
Helix 14
14
A
314 321Right-handed 310
Helix 15
15
A
322 331Right-handed alpha
Helix 16
16
A
340 351Right-handed alpha
Helix 17
17
A
380 397Right-handed alpha
Helix 18
18
A
407 417Right-handed alpha
Helix 19
19
A
435 444Right-handed alpha
Helix 20
20
A
445 448Right-handed 310
Helix 21
21
A
465 476Right-handed alpha
Helix 22
22
A
480 499Right-handed alpha
Helix 23
23
A
541 546Right-handed alpha
Helix 24
24
A
561 565Right-handed 310
Helix 25
25
A
571 581Right-handed alpha
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There are 6 sheets in PDB entry 4JSD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 181first strand
Strand 2
A
184 189anti-parallel
Strand 3
A
206 210anti-parallel
Strand 4
A
7 11parallel
Strand 5
A
229 230parallel
Strand 6
A
512 514anti-parallel
Strand 7
A
248 250anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
49 52anti-parallel
Strand 3
A
569 570anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 62first strand
Strand 2
A
65 70anti-parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
109 116anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 404first strand
Strand 2
A
372 375parallel
Strand 3
A
422 425parallel
Strand 4
A
260 268anti-parallel
Strand 5
A
502 508anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
361 362anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 519first strand
Strand 2
A
547 548anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il