Analysis of interatomic Contacts of Structural Units in PDB entry:
4JSN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JSN entry

There are 2 chains in PDB entry 4JSN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 1385	TRP 2549
D	VAL 8	MET 185

There are110 helices in PDB entry 4JSN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	1386	1407	Right-handed alpha
Helix 2	2	B	1409	1423	Right-handed alpha
Helix 3	3	B	1425	1440	Right-handed alpha
Helix 4	4	B	1445	1453	Right-handed alpha
Helix 5	5	B	1455	1470	Right-handed alpha
Helix 6	6	B	1473	1487	Right-handed alpha
Helix 7	7	B	1489	1499	Right-handed alpha
Helix 8	8	B	1505	1522	Right-handed alpha
Helix 9	9	B	1525	1534	Right-handed alpha
Helix 10	10	B	1540	1554	Right-handed alpha
Helix 11	11	B	1556	1573	Right-handed alpha
Helix 12	12	B	1586	1606	Right-handed alpha
Helix 13	13	B	1611	1625	Right-handed alpha
Helix 14	14	B	1629	1641	Right-handed alpha
Helix 15	15	B	1649	1664	Right-handed alpha
Helix 16	16	B	1665	1678	Right-handed alpha
Helix 17	17	B	1693	1707	Right-handed alpha
Helix 18	18	B	1709	1730	Right-handed alpha
Helix 19	19	B	1736	1763	Right-handed alpha
Helix 20	20	B	1768	1783	Right-handed alpha
Helix 21	21	B	1786	1814	Right-handed alpha
Helix 22	22	B	1868	1894	Right-handed alpha
Helix 23	23	B	1899	1914	Right-handed alpha
Helix 24	24	B	1916	1930	Right-handed alpha
Helix 25	25	B	1932	1937	Right-handed 310
Helix 26	26	B	1938	1944	Right-handed alpha
Helix 27	27	B	1950	1967	Right-handed alpha
Helix 28	28	B	1969	1981	Right-handed alpha
Helix 29	29	B	1984	2021	Right-handed alpha
Helix 30	30	B	2022	2039	Right-handed alpha
Helix 31	31	B	2043	2059	Right-handed alpha
Helix 32	32	B	2064	2092	Right-handed alpha
Helix 33	33	B	2093	2115	Right-handed alpha
Helix 34	34	B	2116	2118	Right-handed 310
Helix 35	35	B	2123	2127	Right-handed alpha
Helix 36	36	B	2127	2133	Right-handed alpha
Helix 37	37	B	2192	2212	Right-handed alpha
Helix 38	38	B	2212	2218	Right-handed alpha
Helix 39	39	B	2246	2257	Right-handed alpha
Helix 40	40	B	2262	2272	Right-handed alpha
Helix 41	41	B	2274	2278	Right-handed 310
Helix 42	42	B	2279	2292	Right-handed alpha
Helix 43	43	B	2297	2307	Right-handed alpha
Helix 44	44	B	2309	2335	Right-handed alpha
Helix 45	45	B	2363	2368	Right-handed alpha
Helix 46	46	B	2380	2387	Right-handed alpha
Helix 47	47	B	2394	2410	Right-handed alpha
Helix 48	48	B	2410	2423	Right-handed alpha
Helix 49	49	B	2427	2436	Right-handed 310
Helix 50	50	B	2493	2508	Right-handed alpha
Helix 51	51	B	2520	2534	Right-handed alpha
Helix 52	52	B	2534	2539	Right-handed alpha
Helix 53	53	B	2540	2541	Right-handed 310
Helix 54	54	B	2542	2546	Right-handed 310
Helix 55	55	D	202	206	Right-handed 310
Helix 56	56	A	1386	1407	Right-handed alpha
Helix 57	57	A	1409	1423	Right-handed alpha
Helix 58	58	A	1425	1440	Right-handed alpha
Helix 59	59	A	1445	1453	Right-handed alpha
Helix 60	60	A	1455	1470	Right-handed alpha
Helix 61	61	A	1473	1487	Right-handed alpha
Helix 62	62	A	1489	1499	Right-handed alpha
Helix 63	63	A	1505	1522	Right-handed alpha
Helix 64	64	A	1525	1534	Right-handed alpha
Helix 65	65	A	1540	1554	Right-handed alpha
Helix 66	66	A	1556	1573	Right-handed alpha
Helix 67	67	A	1586	1606	Right-handed alpha
Helix 68	68	A	1612	1625	Right-handed alpha
Helix 69	69	A	1629	1641	Right-handed alpha
Helix 70	70	A	1649	1664	Right-handed alpha
Helix 71	71	A	1665	1678	Right-handed alpha
Helix 72	72	A	1693	1707	Right-handed alpha
Helix 73	73	A	1709	1730	Right-handed alpha
Helix 74	74	A	1736	1763	Right-handed alpha
Helix 75	75	A	1768	1783	Right-handed alpha
Helix 76	76	A	1786	1814	Right-handed alpha
Helix 77	77	A	1868	1894	Right-handed alpha
Helix 78	78	A	1899	1914	Right-handed alpha
Helix 79	79	A	1916	1930	Right-handed alpha
Helix 80	80	A	1932	1937	Right-handed 310
Helix 81	81	A	1938	1944	Right-handed alpha
Helix 82	82	A	1950	1967	Right-handed alpha
Helix 83	83	A	1969	1981	Right-handed alpha
Helix 84	84	A	1984	2021	Right-handed alpha
Helix 85	85	A	2022	2039	Right-handed alpha
Helix 86	86	A	2043	2059	Right-handed alpha
Helix 87	87	A	2064	2092	Right-handed alpha
Helix 88	88	A	2093	2115	Right-handed alpha
Helix 89	89	A	2116	2118	Right-handed 310
Helix 90	90	A	2123	2127	Right-handed alpha
Helix 91	91	A	2127	2133	Right-handed alpha
Helix 92	92	A	2192	2212	Right-handed alpha
Helix 93	93	A	2212	2218	Right-handed alpha
Helix 94	94	A	2246	2257	Right-handed alpha
Helix 95	95	A	2262	2272	Right-handed alpha
Helix 96	96	A	2274	2278	Right-handed 310
Helix 97	97	A	2279	2292	Right-handed alpha
Helix 98	98	A	2297	2307	Right-handed alpha
Helix 99	99	A	2309	2335	Right-handed alpha
Helix 100	100	A	2363	2368	Right-handed alpha
Helix 101	101	A	2380	2387	Right-handed alpha
Helix 102	102	A	2394	2410	Right-handed alpha
Helix 103	103	A	2410	2423	Right-handed alpha
Helix 104	104	A	2427	2436	Right-handed 310
Helix 105	105	A	2493	2508	Right-handed alpha
Helix 106	106	A	2520	2534	Right-handed alpha
Helix 107	107	A	2534	2539	Right-handed alpha
Helix 108	108	A	2540	2541	Right-handed 310
Helix 109	109	A	2542	2546	Right-handed 310
Helix 110	110	C	202	206	Right-handed 310

There are 20 sheets in PDB entry 4JSN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2120	2122	first strand
Strand 2	B	2159	2162	anti-parallel
Strand 3	B	2170	2176	anti-parallel
Strand 4	B	2153	2156	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2120	2122	first strand
Strand 2	B	2159	2162	anti-parallel
Strand 3	B	2170	2176	anti-parallel
Strand 4	B	2181	2187	anti-parallel
Strand 5	B	2235	2238	anti-parallel
Strand 6	B	2227	2229	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2243	2245	first strand
Strand 2	B	2344	2347	anti-parallel
Strand 3	B	2353	2355	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	39	first strand
Strand 2	D	23	27	anti-parallel
Strand 3	D	13	19	anti-parallel
Strand 4	D	315	322	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	56	60	anti-parallel
Strand 3	D	65	69	anti-parallel
Strand 4	D	79	81	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	D	108	113	anti-parallel
Strand 4	D	123	126	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	136	first strand
Strand 2	D	142	147	anti-parallel
Strand 3	D	152	156	anti-parallel
Strand 4	D	162	165	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	178	first strand
Strand 2	D	184	189	anti-parallel
Strand 3	D	194	199	anti-parallel
Strand 4	D	210	216	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	228	first strand
Strand 2	D	234	239	anti-parallel
Strand 3	D	243	248	anti-parallel
Strand 4	D	254	259	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	293	298	anti-parallel
Strand 4	D	304	309	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2120	2122	first strand
Strand 2	A	2159	2162	anti-parallel
Strand 3	A	2170	2176	anti-parallel
Strand 4	A	2153	2156	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2120	2122	first strand
Strand 2	A	2159	2162	anti-parallel
Strand 3	A	2170	2176	anti-parallel
Strand 4	A	2181	2187	anti-parallel
Strand 5	A	2235	2238	anti-parallel
Strand 6	A	2227	2229	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2243	2245	first strand
Strand 2	A	2344	2347	anti-parallel
Strand 3	A	2353	2355	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	39	first strand
Strand 2	C	23	27	anti-parallel
Strand 3	C	13	19	anti-parallel
Strand 4	C	315	322	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	56	60	anti-parallel
Strand 3	C	65	69	anti-parallel
Strand 4	C	79	81	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	108	113	anti-parallel
Strand 4	C	123	126	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	142	147	anti-parallel
Strand 3	C	152	156	anti-parallel
Strand 4	C	162	165	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	178	first strand
Strand 2	C	184	189	anti-parallel
Strand 3	C	194	199	anti-parallel
Strand 4	C	210	216	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	228	first strand
Strand 2	C	234	239	anti-parallel
Strand 3	C	243	248	anti-parallel
Strand 4	C	254	259	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	293	298	anti-parallel
Strand 4	C	304	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JSN

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JSN