Analysis of interatomic Contacts of Structural Units in PDB entry:
4JSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JSP entry

There are 4 chains in PDB entry 4JSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 1385TRP 2549
D
 VAL 8VAL 324
A
 GLU 1385TRP 2549
C
 VAL 8VAL 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are110 helices in PDB entry 4JSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
1385 1407Right-handed alpha
Helix 2
2
B
1409 1423Right-handed alpha
Helix 3
3
B
1425 1440Right-handed alpha
Helix 4
4
B
1445 1453Right-handed alpha
Helix 5
5
B
1455 1470Right-handed alpha
Helix 6
6
B
1473 1488Right-handed alpha
Helix 7
7
B
1489 1499Right-handed alpha
Helix 8
8
B
1506 1523Right-handed alpha
Helix 9
9
B
1525 1534Right-handed alpha
Helix 10
10
B
1540 1555Right-handed alpha
Helix 11
11
B
1556 1578Right-handed alpha
Helix 12
12
B
1588 1605Right-handed alpha
Helix 13
13
B
1613 1625Right-handed alpha
Helix 14
14
B
1629 1642Right-handed alpha
Helix 15
15
B
1645 1650Right-handed alpha
Helix 16
16
B
1650 1663Right-handed alpha
Helix 17
17
B
1665 1678Right-handed alpha
Helix 18
18
B
1693 1707Right-handed alpha
Helix 19
19
B
1709 1730Right-handed alpha
Helix 20
20
B
1737 1763Right-handed alpha
Helix 21
21
B
1767 1784Right-handed alpha
Helix 22
22
B
1786 1812Right-handed alpha
Helix 23
23
B
1868 1893Right-handed alpha
Helix 24
24
B
1899 1913Right-handed alpha
Helix 25
25
B
1916 1930Right-handed alpha
Helix 26
26
B
1931 1937Right-handed 310
Helix 27
27
B
1938 1944Right-handed alpha
Helix 28
28
B
1950 1967Right-handed alpha
Helix 29
29
B
1972 1981Right-handed alpha
Helix 30
30
B
1984 2021Right-handed alpha
Helix 31
31
B
2022 2040Right-handed alpha
Helix 32
32
B
2043 2060Right-handed alpha
Helix 33
33
B
2064 2092Right-handed alpha
Helix 34
34
B
2095 2115Right-handed alpha
Helix 35
35
B
2116 2118Right-handed 310
Helix 36
36
B
2123 2127Right-handed alpha
Helix 37
37
B
2127 2133Right-handed alpha
Helix 38
38
B
2192 2212Right-handed alpha
Helix 39
39
B
2212 2218Right-handed alpha
Helix 40
40
B
2246 2257Right-handed alpha
Helix 41
41
B
2262 2272Right-handed alpha
Helix 42
42
B
2274 2278Right-handed 310
Helix 43
43
B
2279 2292Right-handed alpha
Helix 44
44
B
2297 2307Right-handed alpha
Helix 45
45
B
2310 2335Right-handed alpha
Helix 46
46
B
2363 2368Right-handed alpha
Helix 47
47
B
2380 2387Right-handed alpha
Helix 48
48
B
2394 2410Right-handed alpha
Helix 49
49
B
2410 2423Right-handed alpha
Helix 50
50
B
2424 2435Right-handed 310
Helix 51
51
B
2493 2509Right-handed alpha
Helix 52
52
B
2520 2534Right-handed alpha
Helix 53
53
B
2534 2539Right-handed alpha
Helix 54
54
B
2540 2541Right-handed 310
Helix 55
55
B
2542 2546Right-handed 310
Helix 56
56
A
1386 1407Right-handed alpha
Helix 57
57
A
1409 1423Right-handed alpha
Helix 58
58
A
1425 1440Right-handed alpha
Helix 59
59
A
1445 1453Right-handed alpha
Helix 60
60
A
1455 1470Right-handed alpha
Helix 61
61
A
1473 1488Right-handed alpha
Helix 62
62
A
1489 1499Right-handed alpha
Helix 63
63
A
1506 1523Right-handed alpha
Helix 64
64
A
1525 1534Right-handed alpha
Helix 65
65
A
1540 1555Right-handed alpha
Helix 66
66
A
1556 1578Right-handed alpha
Helix 67
67
A
1588 1605Right-handed alpha
Helix 68
68
A
1613 1625Right-handed alpha
Helix 69
69
A
1629 1641Right-handed alpha
Helix 70
70
A
1645 1650Right-handed alpha
Helix 71
71
A
1650 1663Right-handed alpha
Helix 72
72
A
1665 1678Right-handed alpha
Helix 73
73
A
1693 1707Right-handed alpha
Helix 74
74
A
1709 1730Right-handed alpha
Helix 75
75
A
1737 1763Right-handed alpha
Helix 76
76
A
1767 1784Right-handed alpha
Helix 77
77
A
1786 1812Right-handed alpha
Helix 78
78
A
1868 1893Right-handed alpha
Helix 79
79
A
1899 1913Right-handed alpha
Helix 80
80
A
1916 1930Right-handed alpha
Helix 81
81
A
1931 1937Right-handed 310
Helix 82
82
A
1938 1944Right-handed alpha
Helix 83
83
A
1950 1967Right-handed alpha
Helix 84
84
A
1972 1981Right-handed alpha
Helix 85
85
A
1984 2021Right-handed alpha
Helix 86
86
A
2022 2040Right-handed alpha
Helix 87
87
A
2043 2060Right-handed alpha
Helix 88
88
A
2064 2092Right-handed alpha
Helix 89
89
A
2095 2115Right-handed alpha
Helix 90
90
A
2116 2118Right-handed 310
Helix 91
91
A
2123 2127Right-handed alpha
Helix 92
92
A
2127 2133Right-handed alpha
Helix 93
93
A
2192 2212Right-handed alpha
Helix 94
94
A
2212 2218Right-handed alpha
Helix 95
95
A
2246 2257Right-handed alpha
Helix 96
96
A
2262 2272Right-handed alpha
Helix 97
97
A
2274 2278Right-handed 310
Helix 98
98
A
2279 2292Right-handed alpha
Helix 99
99
A
2297 2307Right-handed alpha
Helix 100
100
A
2310 2335Right-handed alpha
Helix 101
101
A
2363 2368Right-handed alpha
Helix 102
102
A
2380 2387Right-handed alpha
Helix 103
103
A
2394 2410Right-handed alpha
Helix 104
104
A
2410 2423Right-handed alpha
Helix 105
105
A
2424 2435Right-handed 310
Helix 106
106
A
2493 2509Right-handed alpha
Helix 107
107
A
2520 2534Right-handed alpha
Helix 108
108
A
2534 2539Right-handed alpha
Helix 109
109
A
2540 2541Right-handed 310
Helix 110
110
A
2542 2546Right-handed 310
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There are 20 sheets in PDB entry 4JSP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2120 2122first strand
Strand 2
B
2159 2162anti-parallel
Strand 3
B
2170 2171anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2153 2156first strand
Strand 2
B
2173 2176anti-parallel
Strand 3
B
2181 2187anti-parallel
Strand 4
B
2235 2238anti-parallel
Strand 5
B
2227 2229anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2243 2245first strand
Strand 2
B
2344 2347anti-parallel
Strand 3
B
2353 2355anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 39first strand
Strand 2
D
23 27anti-parallel
Strand 3
D
13 19anti-parallel
Strand 4
D
315 322anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 50first strand
Strand 2
D
57 60anti-parallel
Strand 3
D
65 68anti-parallel
Strand 4
D
79 81anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 93first strand
Strand 2
D
99 104anti-parallel
Strand 3
D
108 113anti-parallel
Strand 4
D
123 126anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
131 136first strand
Strand 2
D
142 147anti-parallel
Strand 3
D
152 156anti-parallel
Strand 4
D
162 165anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
173 178first strand
Strand 2
D
184 189anti-parallel
Strand 3
D
194 200anti-parallel
Strand 4
D
209 216anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
223 228first strand
Strand 2
D
234 239anti-parallel
Strand 3
D
243 248anti-parallel
Strand 4
D
254 259anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
273 278first strand
Strand 2
D
284 289anti-parallel
Strand 3
D
293 298anti-parallel
Strand 4
D
303 309anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2121 2122first strand
Strand 2
A
2159 2162anti-parallel
Strand 3
A
2170 2171anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2153 2156first strand
Strand 2
A
2173 2176anti-parallel
Strand 3
A
2181 2187anti-parallel
Strand 4
A
2235 2238anti-parallel
Strand 5
A
2227 2229anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2243 2245first strand
Strand 2
A
2344 2347anti-parallel
Strand 3
A
2353 2355anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 39first strand
Strand 2
C
23 27anti-parallel
Strand 3
C
13 19anti-parallel
Strand 4
C
315 322anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 50first strand
Strand 2
C
57 60anti-parallel
Strand 3
C
65 68anti-parallel
Strand 4
C
79 81anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 93first strand
Strand 2
C
99 104anti-parallel
Strand 3
C
108 113anti-parallel
Strand 4
C
123 126anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 136first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
152 156anti-parallel
Strand 4
C
162 165anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 178first strand
Strand 2
C
184 189anti-parallel
Strand 3
C
194 200anti-parallel
Strand 4
C
209 216anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 228first strand
Strand 2
C
234 239anti-parallel
Strand 3
C
243 248anti-parallel
Strand 4
C
254 259anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
293 298anti-parallel
Strand 4
C
303 309anti-parallel
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