Analysis of interatomic Contacts of Structural Units in PDB entry:
4JST


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JST entry

There are 2 chains in PDB entry 4JST (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0PRO 170
B
 SER 0PRO 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 4JST. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 29Right-handed alpha
Helix 2
2
A
30 32Right-handed 310
Helix 3
3
A
37 45Right-handed alpha
Helix 4
4
A
50 52Right-handed 310
Helix 5
5
A
53 71Right-handed alpha
Helix 6
6
A
83 97Right-handed alpha
Helix 7
7
A
109 120Right-handed alpha
Helix 8
8
A
126 141Right-handed alpha
Helix 9
9
A
143 148Right-handed alpha
Helix 10
10
A
157 163Right-handed alpha
Helix 11
11
B
20 29Right-handed alpha
Helix 12
12
B
30 32Right-handed 310
Helix 13
13
B
37 45Right-handed alpha
Helix 14
14
B
53 71Right-handed alpha
Helix 15
15
B
83 97Right-handed alpha
Helix 16
16
B
109 119Right-handed alpha
Helix 17
17
B
126 141Right-handed alpha
Helix 18
18
B
143 148Right-handed alpha
Helix 19
19
B
157 163Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4JST. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 6first strand
Strand 2
A
164 169parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
75 78parallel
Strand 3
A
9 14parallel
Strand 4
A
100 106parallel
Strand 5
A
151 155parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 4first strand
Strand 2
B
164 167parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
75 78parallel
Strand 3
B
9 14parallel
Strand 4
B
100 106parallel
Strand 5
B
151 155parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il