Analysis of interatomic Contacts of Structural Units in PDB entry:
4JSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JSV entry

There are 4 chains in PDB entry 4JSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 1385TRP 2549
D
 VAL 8VAL 324
A
 GLU 1385TRP 2549
C
 VAL 8VAL 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are110 helices in PDB entry 4JSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
1385 1407Right-handed alpha
Helix 2
2
B
1409 1423Right-handed alpha
Helix 3
3
B
1425 1440Right-handed alpha
Helix 4
4
B
1445 1453Right-handed alpha
Helix 5
5
B
1455 1469Right-handed alpha
Helix 6
6
B
1473 1487Right-handed alpha
Helix 7
7
B
1489 1499Right-handed alpha
Helix 8
8
B
1505 1523Right-handed alpha
Helix 9
9
B
1525 1534Right-handed alpha
Helix 10
10
B
1540 1554Right-handed alpha
Helix 11
11
B
1556 1573Right-handed alpha
Helix 12
12
B
1573 1578Right-handed alpha
Helix 13
13
B
1587 1604Right-handed alpha
Helix 14
14
B
1611 1625Right-handed alpha
Helix 15
15
B
1629 1641Right-handed alpha
Helix 16
16
B
1645 1650Right-handed alpha
Helix 17
17
B
1650 1664Right-handed alpha
Helix 18
18
B
1665 1678Right-handed alpha
Helix 19
19
B
1693 1707Right-handed alpha
Helix 20
20
B
1709 1730Right-handed alpha
Helix 21
21
B
1737 1763Right-handed alpha
Helix 22
22
B
1768 1784Right-handed alpha
Helix 23
23
B
1786 1812Right-handed alpha
Helix 24
24
B
1868 1893Right-handed alpha
Helix 25
25
B
1899 1913Right-handed alpha
Helix 26
26
B
1916 1930Right-handed alpha
Helix 27
27
B
1932 1937Right-handed 310
Helix 28
28
B
1938 1944Right-handed alpha
Helix 29
29
B
1950 1967Right-handed alpha
Helix 30
30
B
1972 1981Right-handed alpha
Helix 31
31
B
1984 2021Right-handed alpha
Helix 32
32
B
2022 2039Right-handed alpha
Helix 33
33
B
2044 2060Right-handed alpha
Helix 34
34
B
2064 2074Right-handed alpha
Helix 35
35
B
2074 2092Right-handed alpha
Helix 36
36
B
2095 2115Right-handed alpha
Helix 37
37
B
2123 2127Right-handed alpha
Helix 38
38
B
2127 2133Right-handed alpha
Helix 39
39
B
2192 2212Right-handed alpha
Helix 40
40
B
2212 2218Right-handed alpha
Helix 41
41
B
2246 2257Right-handed alpha
Helix 42
42
B
2262 2272Right-handed alpha
Helix 43
43
B
2274 2278Right-handed 310
Helix 44
44
B
2279 2293Right-handed alpha
Helix 45
45
B
2298 2307Right-handed alpha
Helix 46
46
B
2310 2335Right-handed alpha
Helix 47
47
B
2363 2368Right-handed alpha
Helix 48
48
B
2380 2387Right-handed alpha
Helix 49
49
B
2394 2410Right-handed alpha
Helix 50
50
B
2410 2423Right-handed alpha
Helix 51
51
B
2424 2436Right-handed 310
Helix 52
52
B
2493 2509Right-handed alpha
Helix 53
53
B
2520 2534Right-handed alpha
Helix 54
54
B
2534 2539Right-handed alpha
Helix 55
55
B
2542 2546Right-handed 310
Helix 56
56
A
1386 1407Right-handed alpha
Helix 57
57
A
1409 1423Right-handed alpha
Helix 58
58
A
1425 1440Right-handed alpha
Helix 59
59
A
1445 1453Right-handed alpha
Helix 60
60
A
1455 1469Right-handed alpha
Helix 61
61
A
1473 1487Right-handed alpha
Helix 62
62
A
1489 1499Right-handed alpha
Helix 63
63
A
1505 1523Right-handed alpha
Helix 64
64
A
1525 1534Right-handed alpha
Helix 65
65
A
1540 1554Right-handed alpha
Helix 66
66
A
1556 1573Right-handed alpha
Helix 67
67
A
1573 1578Right-handed alpha
Helix 68
68
A
1587 1604Right-handed alpha
Helix 69
69
A
1611 1625Right-handed alpha
Helix 70
70
A
1629 1641Right-handed alpha
Helix 71
71
A
1645 1650Right-handed alpha
Helix 72
72
A
1650 1664Right-handed alpha
Helix 73
73
A
1665 1678Right-handed alpha
Helix 74
74
A
1693 1707Right-handed alpha
Helix 75
75
A
1709 1730Right-handed alpha
Helix 76
76
A
1737 1763Right-handed alpha
Helix 77
77
A
1768 1784Right-handed alpha
Helix 78
78
A
1786 1812Right-handed alpha
Helix 79
79
A
1868 1893Right-handed alpha
Helix 80
80
A
1899 1913Right-handed alpha
Helix 81
81
A
1916 1930Right-handed alpha
Helix 82
82
A
1932 1937Right-handed 310
Helix 83
83
A
1938 1944Right-handed alpha
Helix 84
84
A
1950 1967Right-handed alpha
Helix 85
85
A
1972 1981Right-handed alpha
Helix 86
86
A
1984 2021Right-handed alpha
Helix 87
87
A
2022 2039Right-handed alpha
Helix 88
88
A
2044 2060Right-handed alpha
Helix 89
89
A
2064 2074Right-handed alpha
Helix 90
90
A
2074 2092Right-handed alpha
Helix 91
91
A
2095 2115Right-handed alpha
Helix 92
92
A
2123 2127Right-handed alpha
Helix 93
93
A
2127 2133Right-handed alpha
Helix 94
94
A
2192 2212Right-handed alpha
Helix 95
95
A
2212 2218Right-handed alpha
Helix 96
96
A
2246 2257Right-handed alpha
Helix 97
97
A
2262 2272Right-handed alpha
Helix 98
98
A
2274 2278Right-handed 310
Helix 99
99
A
2279 2293Right-handed alpha
Helix 100
100
A
2298 2307Right-handed alpha
Helix 101
101
A
2310 2335Right-handed alpha
Helix 102
102
A
2363 2368Right-handed alpha
Helix 103
103
A
2380 2387Right-handed alpha
Helix 104
104
A
2394 2410Right-handed alpha
Helix 105
105
A
2410 2423Right-handed alpha
Helix 106
106
A
2424 2436Right-handed 310
Helix 107
107
A
2493 2509Right-handed alpha
Helix 108
108
A
2520 2534Right-handed alpha
Helix 109
109
A
2534 2539Right-handed alpha
Helix 110
110
A
2542 2546Right-handed 310
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There are 20 sheets in PDB entry 4JSV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2120 2122first strand
Strand 2
B
2159 2162anti-parallel
Strand 3
B
2170 2171anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2153 2156first strand
Strand 2
B
2173 2176anti-parallel
Strand 3
B
2181 2187anti-parallel
Strand 4
B
2235 2238anti-parallel
Strand 5
B
2227 2229anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2243 2245first strand
Strand 2
B
2344 2347anti-parallel
Strand 3
B
2353 2355anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 39first strand
Strand 2
D
23 27anti-parallel
Strand 3
D
13 19anti-parallel
Strand 4
D
315 322anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 50first strand
Strand 2
D
57 60anti-parallel
Strand 3
D
65 68anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 93first strand
Strand 2
D
99 104anti-parallel
Strand 3
D
108 113anti-parallel
Strand 4
D
123 126anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
131 136first strand
Strand 2
D
142 147anti-parallel
Strand 3
D
152 156anti-parallel
Strand 4
D
162 165anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
173 178first strand
Strand 2
D
184 189anti-parallel
Strand 3
D
194 200anti-parallel
Strand 4
D
209 216anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
223 228first strand
Strand 2
D
234 239anti-parallel
Strand 3
D
243 248anti-parallel
Strand 4
D
254 259anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
273 278first strand
Strand 2
D
284 289anti-parallel
Strand 3
D
293 298anti-parallel
Strand 4
D
304 309anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2120 2122first strand
Strand 2
A
2159 2162anti-parallel
Strand 3
A
2170 2171anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2153 2156first strand
Strand 2
A
2173 2176anti-parallel
Strand 3
A
2181 2187anti-parallel
Strand 4
A
2235 2238anti-parallel
Strand 5
A
2227 2229anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2243 2245first strand
Strand 2
A
2344 2347anti-parallel
Strand 3
A
2353 2355anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 39first strand
Strand 2
C
23 27anti-parallel
Strand 3
C
13 19anti-parallel
Strand 4
C
315 322anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 50first strand
Strand 2
C
57 60anti-parallel
Strand 3
C
65 68anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 93first strand
Strand 2
C
99 104anti-parallel
Strand 3
C
108 113anti-parallel
Strand 4
C
123 126anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 136first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
152 156anti-parallel
Strand 4
C
162 165anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 178first strand
Strand 2
C
184 189anti-parallel
Strand 3
C
194 199anti-parallel
Strand 4
C
210 216anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 228first strand
Strand 2
C
234 239anti-parallel
Strand 3
C
243 248anti-parallel
Strand 4
C
254 259anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
293 298anti-parallel
Strand 4
C
304 309anti-parallel
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