Analysis of interatomic Contacts of Structural Units in PDB entry:
4JT5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JT5 entry

There are 4 chains in PDB entry 4JT5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 1385	TRP 2549
D	VAL 8	VAL 324
A	GLU 1385	TRP 2549
C	VAL 8	VAL 324

There are113 helices in PDB entry 4JT5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	1386	1407	Right-handed alpha
Helix 2	2	B	1409	1423	Right-handed alpha
Helix 3	3	B	1425	1438	Right-handed alpha
Helix 4	4	B	1445	1453	Right-handed alpha
Helix 5	5	B	1455	1470	Right-handed alpha
Helix 6	6	B	1473	1487	Right-handed alpha
Helix 7	7	B	1489	1499	Right-handed alpha
Helix 8	8	B	1506	1523	Right-handed alpha
Helix 9	9	B	1525	1534	Right-handed alpha
Helix 10	10	B	1540	1554	Right-handed alpha
Helix 11	11	B	1556	1573	Right-handed alpha
Helix 12	12	B	1573	1578	Right-handed alpha
Helix 13	13	B	1588	1608	Right-handed alpha
Helix 14	14	B	1613	1625	Right-handed alpha
Helix 15	15	B	1629	1641	Right-handed alpha
Helix 16	16	B	1645	1650	Right-handed alpha
Helix 17	17	B	1650	1663	Right-handed alpha
Helix 18	18	B	1665	1678	Right-handed alpha
Helix 19	19	B	1693	1707	Right-handed alpha
Helix 20	20	B	1710	1730	Right-handed alpha
Helix 21	21	B	1736	1763	Right-handed alpha
Helix 22	22	B	1767	1784	Right-handed alpha
Helix 23	23	B	1786	1814	Right-handed alpha
Helix 24	24	B	1868	1894	Right-handed alpha
Helix 25	25	B	1899	1913	Right-handed alpha
Helix 26	26	B	1916	1930	Right-handed alpha
Helix 27	27	B	1932	1937	Right-handed 310
Helix 28	28	B	1938	1944	Right-handed alpha
Helix 29	29	B	1950	1967	Right-handed alpha
Helix 30	30	B	1972	1981	Right-handed alpha
Helix 31	31	B	1984	1998	Right-handed alpha
Helix 32	32	B	1998	2021	Right-handed alpha
Helix 33	33	B	2022	2039	Right-handed alpha
Helix 34	34	B	2043	2060	Right-handed alpha
Helix 35	35	B	2064	2092	Right-handed alpha
Helix 36	36	B	2096	2115	Right-handed alpha
Helix 37	37	B	2123	2127	Right-handed alpha
Helix 38	38	B	2127	2133	Right-handed alpha
Helix 39	39	B	2192	2212	Right-handed alpha
Helix 40	40	B	2212	2218	Right-handed alpha
Helix 41	41	B	2246	2257	Right-handed alpha
Helix 42	42	B	2262	2272	Right-handed alpha
Helix 43	43	B	2274	2278	Right-handed 310
Helix 44	44	B	2279	2292	Right-handed alpha
Helix 45	45	B	2298	2307	Right-handed alpha
Helix 46	46	B	2310	2334	Right-handed alpha
Helix 47	47	B	2363	2368	Right-handed alpha
Helix 48	48	B	2380	2387	Right-handed alpha
Helix 49	49	B	2394	2410	Right-handed alpha
Helix 50	50	B	2410	2423	Right-handed alpha
Helix 51	51	B	2427	2435	Right-handed 310
Helix 52	52	B	2493	2509	Right-handed alpha
Helix 53	53	B	2520	2534	Right-handed alpha
Helix 54	54	B	2534	2539	Right-handed alpha
Helix 55	55	B	2540	2541	Right-handed 310
Helix 56	56	B	2542	2546	Right-handed 310
Helix 57	57	A	1386	1407	Right-handed alpha
Helix 58	58	A	1409	1423	Right-handed alpha
Helix 59	59	A	1425	1438	Right-handed alpha
Helix 60	60	A	1445	1453	Right-handed alpha
Helix 61	61	A	1455	1470	Right-handed alpha
Helix 62	62	A	1473	1487	Right-handed alpha
Helix 63	63	A	1489	1499	Right-handed alpha
Helix 64	64	A	1505	1523	Right-handed alpha
Helix 65	65	A	1525	1534	Right-handed alpha
Helix 66	66	A	1540	1554	Right-handed alpha
Helix 67	67	A	1556	1573	Right-handed alpha
Helix 68	68	A	1573	1578	Right-handed alpha
Helix 69	69	A	1588	1605	Right-handed alpha
Helix 70	70	A	1613	1625	Right-handed alpha
Helix 71	71	A	1629	1641	Right-handed alpha
Helix 72	72	A	1645	1650	Right-handed alpha
Helix 73	73	A	1650	1663	Right-handed alpha
Helix 74	74	A	1665	1678	Right-handed alpha
Helix 75	75	A	1693	1707	Right-handed alpha
Helix 76	76	A	1709	1730	Right-handed alpha
Helix 77	77	A	1736	1763	Right-handed alpha
Helix 78	78	A	1767	1784	Right-handed alpha
Helix 79	79	A	1786	1814	Right-handed alpha
Helix 80	80	A	1868	1894	Right-handed alpha
Helix 81	81	A	1899	1913	Right-handed alpha
Helix 82	82	A	1916	1930	Right-handed alpha
Helix 83	83	A	1932	1937	Right-handed 310
Helix 84	84	A	1938	1944	Right-handed alpha
Helix 85	85	A	1950	1967	Right-handed alpha
Helix 86	86	A	1972	1981	Right-handed alpha
Helix 87	87	A	1984	1998	Right-handed alpha
Helix 88	88	A	1998	2021	Right-handed alpha
Helix 89	89	A	2022	2039	Right-handed alpha
Helix 90	90	A	2043	2060	Right-handed alpha
Helix 91	91	A	2064	2092	Right-handed alpha
Helix 92	92	A	2096	2115	Right-handed alpha
Helix 93	93	A	2116	2118	Right-handed 310
Helix 94	94	A	2123	2127	Right-handed alpha
Helix 95	95	A	2127	2133	Right-handed alpha
Helix 96	96	A	2192	2212	Right-handed alpha
Helix 97	97	A	2212	2218	Right-handed alpha
Helix 98	98	A	2246	2257	Right-handed alpha
Helix 99	99	A	2262	2272	Right-handed alpha
Helix 100	100	A	2274	2278	Right-handed 310
Helix 101	101	A	2279	2292	Right-handed alpha
Helix 102	102	A	2298	2307	Right-handed alpha
Helix 103	103	A	2310	2335	Right-handed alpha
Helix 104	104	A	2363	2368	Right-handed alpha
Helix 105	105	A	2380	2387	Right-handed alpha
Helix 106	106	A	2394	2410	Right-handed alpha
Helix 107	107	A	2410	2423	Right-handed alpha
Helix 108	108	A	2427	2435	Right-handed 310
Helix 109	109	A	2493	2509	Right-handed alpha
Helix 110	110	A	2520	2534	Right-handed alpha
Helix 111	111	A	2534	2539	Right-handed alpha
Helix 112	112	A	2540	2541	Right-handed 310
Helix 113	113	A	2542	2546	Right-handed 310

There are 20 sheets in PDB entry 4JT5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2120	2122	first strand
Strand 2	B	2159	2162	anti-parallel
Strand 3	B	2170	2176	anti-parallel
Strand 4	B	2153	2156	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2120	2122	first strand
Strand 2	B	2159	2162	anti-parallel
Strand 3	B	2170	2176	anti-parallel
Strand 4	B	2179	2187	anti-parallel
Strand 5	B	2235	2238	anti-parallel
Strand 6	B	2227	2229	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2243	2245	first strand
Strand 2	B	2344	2347	anti-parallel
Strand 3	B	2353	2355	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	39	first strand
Strand 2	D	23	27	anti-parallel
Strand 3	D	14	19	anti-parallel
Strand 4	D	315	321	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	57	60	anti-parallel
Strand 3	D	65	68	anti-parallel
Strand 4	D	77	81	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	D	108	113	anti-parallel
Strand 4	D	123	126	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	136	first strand
Strand 2	D	142	147	anti-parallel
Strand 3	D	152	156	anti-parallel
Strand 4	D	162	165	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	178	first strand
Strand 2	D	184	189	anti-parallel
Strand 3	D	194	200	anti-parallel
Strand 4	D	209	216	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	228	first strand
Strand 2	D	234	239	anti-parallel
Strand 3	D	243	248	anti-parallel
Strand 4	D	254	259	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	293	298	anti-parallel
Strand 4	D	304	309	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2120	2122	first strand
Strand 2	A	2159	2162	anti-parallel
Strand 3	A	2170	2171	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2153	2156	first strand
Strand 2	A	2173	2176	anti-parallel
Strand 3	A	2179	2187	anti-parallel
Strand 4	A	2235	2238	anti-parallel
Strand 5	A	2227	2229	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2243	2245	first strand
Strand 2	A	2344	2347	anti-parallel
Strand 3	A	2353	2355	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	39	first strand
Strand 2	C	23	27	anti-parallel
Strand 3	C	14	19	anti-parallel
Strand 4	C	315	321	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	50	first strand
Strand 2	C	57	61	anti-parallel
Strand 3	C	65	68	anti-parallel
Strand 4	C	77	81	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	108	113	anti-parallel
Strand 4	C	123	126	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	142	147	anti-parallel
Strand 3	C	152	156	anti-parallel
Strand 4	C	162	165	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	178	first strand
Strand 2	C	184	189	anti-parallel
Strand 3	C	194	200	anti-parallel
Strand 4	C	209	216	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	228	first strand
Strand 2	C	234	239	anti-parallel
Strand 3	C	243	248	anti-parallel
Strand 4	C	254	259	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	293	298	anti-parallel
Strand 4	C	304	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JT5

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JT5