Analysis of interatomic Contacts of Structural Units in PDB entry:
4JTC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JTC entry

There are 5 chains in PDB entry 4JTC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 36SER 361
B
 SER 32THR 417
G
 LEU 36SER 361
H
 SER 32THR 417
Y
 PHE 2SER 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 4JTC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 79Right-handed alpha
Helix 2
2
A
93 107Right-handed alpha
Helix 3
3
A
109 113Right-handed 310
Helix 4
4
A
125 129Right-handed 310
Helix 5
5
A
132 148Right-handed alpha
Helix 6
6
A
165 179Right-handed alpha
Helix 7
7
A
191 206Right-handed alpha
Helix 8
8
A
222 228Right-handed alpha
Helix 9
9
A
228 237Right-handed alpha
Helix 10
10
A
246 253Right-handed 310
Helix 11
11
A
263 267Right-handed 310
Helix 12
12
A
270 279Right-handed alpha
Helix 13
13
A
279 300Right-handed alpha
Helix 14
14
A
302 312Right-handed alpha
Helix 15
15
A
326 334Right-handed alpha
Helix 16
16
A
335 340Right-handed alpha
Helix 17
17
A
341 343Right-handed 310
Helix 18
18
A
344 356Right-handed alpha
Helix 19
19
B
48 52Right-handed alpha
Helix 20
20
B
61 66Right-handed alpha
Helix 21
21
B
81 95Right-handed alpha
Helix 22
22
B
105 116Right-handed alpha
Helix 23
23
B
119 130Right-handed alpha
Helix 24
24
B
145 150Right-handed alpha
Helix 25
25
B
159 183Right-handed alpha
Helix 26
26
B
185 190Right-handed alpha
Helix 27
27
B
201 211Right-handed alpha
Helix 28
28
B
220 243Right-handed alpha
Helix 29
29
B
246 252Right-handed 310
Helix 30
30
B
253 262Right-handed alpha
Helix 31
31
B
263 276Right-handed alpha
Helix 32
32
B
278 283Right-handed alpha
Helix 33
33
B
285 295Right-handed alpha
Helix 34
34
B
296 306Right-handed 310
Helix 35
35
B
307 320Right-handed alpha
Helix 36
36
B
320 346Right-handed alpha
Helix 37
37
B
356 369Right-handed alpha
Helix 38
38
B
380 400Right-handed alpha
Helix 39
39
B
401 415Right-handed alpha
Helix 40
40
G
65 79Right-handed alpha
Helix 41
41
G
89 92Right-handed 310
Helix 42
42
G
93 107Right-handed alpha
Helix 43
43
G
109 113Right-handed 310
Helix 44
44
G
125 129Right-handed 310
Helix 45
45
G
132 148Right-handed alpha
Helix 46
46
G
165 179Right-handed alpha
Helix 47
47
G
191 206Right-handed alpha
Helix 48
48
G
222 228Right-handed alpha
Helix 49
49
G
228 237Right-handed alpha
Helix 50
50
G
246 253Right-handed 310
Helix 51
51
G
263 267Right-handed 310
Helix 52
52
G
270 279Right-handed alpha
Helix 53
53
G
279 300Right-handed alpha
Helix 54
54
G
302 312Right-handed alpha
Helix 55
55
G
326 335Right-handed alpha
Helix 56
56
G
335 340Right-handed alpha
Helix 57
57
G
344 356Right-handed alpha
Helix 58
58
H
48 52Right-handed alpha
Helix 59
59
H
61 66Right-handed alpha
Helix 60
60
H
81 95Right-handed alpha
Helix 61
61
H
105 116Right-handed alpha
Helix 62
62
H
119 129Right-handed alpha
Helix 63
63
H
150 155Right-handed alpha
Helix 64
64
H
159 182Right-handed alpha
Helix 65
65
H
220 238Right-handed alpha
Helix 66
66
H
247 251Right-handed 310
Helix 67
67
H
253 255Right-handed 310
Helix 68
68
H
256 261Right-handed alpha
Helix 69
69
H
263 268Right-handed alpha
Helix 70
70
H
286 291Right-handed alpha
Helix 71
71
H
295 303Right-handed 310
Helix 72
72
H
307 319Right-handed alpha
Helix 73
73
H
322 346Right-handed alpha
Helix 74
74
H
356 369Right-handed alpha
Helix 75
75
H
382 398Right-handed alpha
Helix 76
76
H
400 414Right-handed alpha
Helix 77
77
Y
9 12Right-handed 310
Helix 78
78
Y
13 21Right-handed alpha
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There are 6 sheets in PDB entry 4JTC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
48 50anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
83 87parallel
Strand 3
A
114 119parallel
Strand 4
A
152 157parallel
Strand 5
A
182 188parallel
Strand 6
A
212 214parallel
Strand 7
A
239 243parallel
Strand 8
A
317 322parallel
Strand 9
A
52 55parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
75 78parallel
Strand 4
B
69 70anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
39 41first strand
Strand 2
G
48 50anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
52 55first strand
Strand 2
G
83 87parallel
Strand 3
G
114 119parallel
Strand 4
G
152 157parallel
Strand 5
G
182 188parallel
Strand 6
G
212 216parallel
Strand 7
G
239 243parallel
Strand 8
G
317 322parallel
Strand 9
G
52 55parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
42 47first strand
Strand 2
H
34 39anti-parallel
Strand 3
H
75 78parallel
Strand 4
H
69 70anti-parallel
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