Analysis of interatomic Contacts of Structural Units in PDB entry:
4JU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JU5 entry

There are 2 chains in PDB entry 4JU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 136LEU 347
B
 ALA 136LEU 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4JU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
142 152Right-handed alpha
Helix 2
2
A
166 179Right-handed alpha
Helix 3
3
A
189 196Right-handed alpha
Helix 4
4
A
221 233Right-handed alpha
Helix 5
5
A
244 251Right-handed alpha
Helix 6
6
A
267 282Right-handed alpha
Helix 7
7
A
295 297Right-handed 310
Helix 8
8
A
298 305Right-handed alpha
Helix 9
9
A
308 312Right-handed 310
Helix 10
10
A
336 344Right-handed alpha
Helix 11
11
B
142 152Right-handed alpha
Helix 12
12
B
166 178Right-handed alpha
Helix 13
13
B
189 196Right-handed alpha
Helix 14
14
B
221 233Right-handed alpha
Helix 15
15
B
244 250Right-handed alpha
Helix 16
16
B
267 281Right-handed alpha
Helix 17
17
B
295 297Right-handed 310
Helix 18
18
B
298 305Right-handed alpha
Helix 19
19
B
308 312Right-handed 310
Helix 20
20
B
338 347Right-handed alpha
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There are 3 sheets in PDB entry 4JU5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
184 187parallel
Strand 3
A
155 160parallel
Strand 4
A
202 207anti-parallel
Strand 5
A
213 215anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
287 291parallel
Strand 3
A
255 260parallel
Strand 4
A
314 321anti-parallel
Strand 5
B
314 320anti-parallel
Strand 6
B
255 260anti-parallel
Strand 7
B
286 291parallel
Strand 8
B
237 239parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 139first strand
Strand 2
B
184 187parallel
Strand 3
B
155 160parallel
Strand 4
B
202 207anti-parallel
Strand 5
B
213 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il