Analysis of interatomic Contacts of Structural Units in PDB entry:
4JUG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JUG entry

There are 5 chains in PDB entry 4JUG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 5	ARG 327
B	GLY 501	ARG 670
C	ASP 5	ARG 327
D	GLY 501	ASN 669
E	ASP 5	PRO 294

There are 51 helices in PDB entry 4JUG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	60	67	Right-handed alpha
Helix 2	2	A	71	76	Right-handed 310
Helix 3	3	A	101	111	Right-handed alpha
Helix 4	4	A	122	127	Right-handed alpha
Helix 5	5	A	187	196	Right-handed alpha
Helix 6	6	B	537	559	Right-handed alpha
Helix 7	7	B	574	627	Right-handed alpha
Helix 8	8	B	645	653	Right-handed alpha
Helix 9	9	B	663	670	Right-handed alpha
Helix 10	10	C	60	67	Right-handed alpha
Helix 11	11	C	68	77	Right-handed 310
Helix 12	12	C	101	110	Right-handed alpha
Helix 13	13	C	122	127	Right-handed alpha
Helix 14	14	C	187	196	Right-handed alpha
Helix 15	15	D	537	559	Right-handed alpha
Helix 16	16	D	574	627	Right-handed alpha
Helix 17	17	D	645	653	Right-handed alpha
Helix 18	18	E	60	67	Right-handed alpha
Helix 19	19	E	68	75	Right-handed 310
Helix 20	20	E	101	110	Right-handed alpha
Helix 21	21	E	122	127	Right-handed alpha
Helix 22	22	E	136	140	Right-handed 310
Helix 23	23	E	187	196	Right-handed alpha
Helix 24	24	F	537	558	Right-handed alpha
Helix 25	25	F	574	627	Right-handed alpha
Helix 26	26	F	645	655	Right-handed alpha
Helix 27	27	G	60	67	Right-handed alpha
Helix 28	28	G	71	76	Right-handed 310
Helix 29	29	G	101	109	Right-handed alpha
Helix 30	30	G	122	127	Right-handed alpha
Helix 31	31	G	187	195	Right-handed alpha
Helix 32	32	H	537	559	Right-handed alpha
Helix 33	33	H	574	627	Right-handed alpha
Helix 34	34	H	645	655	Right-handed alpha
Helix 35	35	H	663	669	Right-handed alpha
Helix 36	36	I	60	67	Right-handed alpha
Helix 37	37	I	68	77	Right-handed 310
Helix 38	38	I	101	110	Right-handed alpha
Helix 39	39	I	122	127	Right-handed alpha
Helix 40	40	I	187	196	Right-handed alpha
Helix 41	41	J	537	559	Right-handed alpha
Helix 42	42	J	574	627	Right-handed alpha
Helix 43	43	J	645	653	Right-handed alpha
Helix 44	44	K	60	67	Right-handed alpha
Helix 45	45	K	68	75	Right-handed 310
Helix 46	46	K	101	110	Right-handed alpha
Helix 47	47	K	122	127	Right-handed alpha
Helix 48	48	K	187	196	Right-handed alpha
Helix 49	49	L	537	558	Right-handed alpha
Helix 50	50	L	574	627	Right-handed alpha
Helix 51	51	L	645	655	Right-handed alpha

There are 66 sheets in PDB entry 4JUG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	536	first strand
Strand 2	B	522	527	anti-parallel
Strand 3	A	6	11	anti-parallel
Strand 4	B	637	640	anti-parallel
Strand 5	B	630	632	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	28	29	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	316	318	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	295	296	parallel
Strand 3	A	308	309	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	275	279	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	83	85	parallel
Strand 3	A	268	270	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	119	first strand
Strand 2	A	256	262	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	251	254	anti-parallel
Strand 5	A	151	153	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	119	first strand
Strand 2	A	256	262	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	229	237	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	155	156	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	141	first strand
Strand 2	A	144	146	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	210	213	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	303	304	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	532	536	first strand
Strand 2	D	522	527	anti-parallel
Strand 3	C	6	11	anti-parallel
Strand 4	D	637	640	anti-parallel
Strand 5	D	630	634	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	28	29	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	316	318	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	295	296	parallel
Strand 3	C	308	309	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	275	280	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	83	85	parallel
Strand 3	C	268	270	parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	119	first strand
Strand 2	C	256	262	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	251	254	anti-parallel
Strand 5	C	151	153	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	119	first strand
Strand 2	C	256	262	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	229	237	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	141	first strand
Strand 2	C	144	146	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	169	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	202	205	anti-parallel
Strand 4	C	210	213	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	303	304	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	533	536	first strand
Strand 2	F	522	526	anti-parallel
Strand 3	E	6	11	anti-parallel
Strand 4	F	637	640	anti-parallel
Strand 5	F	630	632	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	20	first strand
Strand 2	E	28	29	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	35	first strand
Strand 2	E	316	318	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	295	296	parallel
Strand 3	E	308	309	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	49	first strand
Strand 2	E	275	280	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	57	first strand
Strand 2	E	83	85	parallel
Strand 3	E	268	270	parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	119	first strand
Strand 2	E	256	262	anti-parallel
Strand 3	E	176	184	anti-parallel
Strand 4	E	251	254	anti-parallel
Strand 5	E	151	153	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	119	first strand
Strand 2	E	256	262	anti-parallel
Strand 3	E	176	184	anti-parallel
Strand 4	E	229	237	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	169	first strand
Strand 2	E	242	247	anti-parallel
Strand 3	E	202	205	anti-parallel
Strand 4	E	210	213	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	287	288	first strand
Strand 2	E	282	284	anti-parallel
Strand 3	E	303	304	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	532	536	first strand
Strand 2	H	522	527	anti-parallel
Strand 3	G	6	11	anti-parallel
Strand 4	H	637	640	anti-parallel
Strand 5	H	630	632	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	20	first strand
Strand 2	G	28	29	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	35	first strand
Strand 2	G	316	318	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	G	295	296	parallel
Strand 3	G	308	309	parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	48	first strand
Strand 2	G	275	279	parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	55	first strand
Strand 2	G	83	85	parallel
Strand 3	G	268	270	parallel

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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	112	119	first strand
Strand 2	G	256	262	anti-parallel
Strand 3	G	175	184	anti-parallel
Strand 4	G	251	254	anti-parallel
Strand 5	G	151	153	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	112	119	first strand
Strand 2	G	256	262	anti-parallel
Strand 3	G	175	184	anti-parallel
Strand 4	G	229	237	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	141	first strand
Strand 2	G	144	146	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	169	first strand
Strand 2	G	242	247	anti-parallel
Strand 3	G	202	205	anti-parallel
Strand 4	G	210	213	anti-parallel

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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	288	289	first strand
Strand 2	G	282	283	anti-parallel
Strand 3	G	303	304	anti-parallel

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There are 5 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	532	536	first strand
Strand 2	J	522	527	anti-parallel
Strand 3	I	6	11	anti-parallel
Strand 4	J	637	640	anti-parallel
Strand 5	J	630	634	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	20	first strand
Strand 2	I	28	29	anti-parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	35	first strand
Strand 2	I	316	318	anti-parallel

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There are 3 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	37	38	first strand
Strand 2	I	295	296	parallel
Strand 3	I	308	309	parallel

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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	49	first strand
Strand 2	I	275	280	parallel

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There are 3 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	54	55	first strand
Strand 2	I	83	85	parallel
Strand 3	I	268	270	parallel

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There are 5 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	112	118	first strand
Strand 2	I	257	262	anti-parallel
Strand 3	I	176	184	anti-parallel
Strand 4	I	251	254	anti-parallel
Strand 5	I	151	153	anti-parallel

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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	112	118	first strand
Strand 2	I	257	262	anti-parallel
Strand 3	I	176	184	anti-parallel
Strand 4	I	229	237	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	141	first strand
Strand 2	I	144	146	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	164	169	first strand
Strand 2	I	242	247	anti-parallel
Strand 3	I	202	205	anti-parallel
Strand 4	I	210	213	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	282	283	first strand
Strand 2	I	303	304	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	532	536	first strand
Strand 2	L	522	527	anti-parallel
Strand 3	K	6	11	anti-parallel
Strand 4	L	637	640	anti-parallel
Strand 5	L	630	632	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	20	first strand
Strand 2	K	28	29	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	35	first strand
Strand 2	K	316	318	anti-parallel

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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	37	38	first strand
Strand 2	K	295	296	parallel
Strand 3	K	308	309	parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	46	49	first strand
Strand 2	K	275	280	parallel

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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	55	first strand
Strand 2	K	83	85	parallel
Strand 3	K	268	270	parallel

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There are 5 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	112	119	first strand
Strand 2	K	256	262	anti-parallel
Strand 3	K	176	184	anti-parallel
Strand 4	K	251	254	anti-parallel
Strand 5	K	151	153	anti-parallel

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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	112	119	first strand
Strand 2	K	256	262	anti-parallel
Strand 3	K	176	184	anti-parallel
Strand 4	K	229	237	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	136	140	first strand
Strand 2	K	145	146	anti-parallel

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There are 4 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	164	169	first strand
Strand 2	K	242	247	anti-parallel
Strand 3	K	202	205	anti-parallel
Strand 4	K	210	213	anti-parallel

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There are 3 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	287	288	first strand
Strand 2	K	282	284	anti-parallel
Strand 3	K	303	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JUG

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JUG