Analysis of interatomic Contacts of Structural Units in PDB entry:
4JUL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JUL entry

There are 12 chains in PDB entry 4JUL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 10	SER 323
B	GLY 1	ARG 170
C	GLY 10	SER 323
D	GLY 1	GLU 172
E	PRO 9	SER 323
F	GLY 1	GLU 172
H	GLY 10	SER 323
I	GLY 1	ARG 170
J	GLY 10	SER 323
K	GLY 1	GLU 172
L	GLN 12	SER 323
M	GLY 1	LYS 169

There are 56 helices in PDB entry 4JUL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	65	72	Right-handed alpha
Helix 2	2	A	73	80	Right-handed 310
Helix 3	3	A	104	113	Right-handed alpha
Helix 4	4	A	125	127	Right-handed 310
Helix 5	5	A	187	196	Right-handed alpha
Helix 6	6	B	37	58	Right-handed alpha
Helix 7	7	B	74	127	Right-handed alpha
Helix 8	8	B	145	155	Right-handed alpha
Helix 9	9	B	158	161	Right-handed 310
Helix 10	10	B	162	168	Right-handed alpha
Helix 11	11	C	65	72	Right-handed alpha
Helix 12	12	C	76	80	Right-handed 310
Helix 13	13	C	104	113	Right-handed alpha
Helix 14	14	C	125	127	Right-handed 310
Helix 15	15	C	187	195	Right-handed alpha
Helix 16	16	D	37	48	Right-handed alpha
Helix 17	17	D	48	58	Right-handed alpha
Helix 18	18	D	74	127	Right-handed alpha
Helix 19	19	D	145	155	Right-handed alpha
Helix 20	20	D	162	172	Right-handed alpha
Helix 21	21	E	65	72	Right-handed alpha
Helix 22	22	E	73	80	Right-handed 310
Helix 23	23	E	104	113	Right-handed alpha
Helix 24	24	E	125	127	Right-handed 310
Helix 25	25	E	187	195	Right-handed alpha
Helix 26	26	F	37	60	Right-handed alpha
Helix 27	27	F	74	127	Right-handed alpha
Helix 28	28	F	145	155	Right-handed alpha
Helix 29	29	F	158	163	Right-handed alpha
Helix 30	30	F	163	171	Right-handed alpha
Helix 31	31	H	65	72	Right-handed alpha
Helix 32	32	H	73	80	Right-handed 310
Helix 33	33	H	104	113	Right-handed alpha
Helix 34	34	H	187	195	Right-handed alpha
Helix 35	35	I	37	61	Right-handed alpha
Helix 36	36	I	74	127	Right-handed alpha
Helix 37	37	I	145	155	Right-handed alpha
Helix 38	38	I	159	170	Right-handed alpha
Helix 39	39	J	65	72	Right-handed alpha
Helix 40	40	J	76	80	Right-handed 310
Helix 41	41	J	104	113	Right-handed alpha
Helix 42	42	J	187	195	Right-handed alpha
Helix 43	43	K	37	58	Right-handed alpha
Helix 44	44	K	74	127	Right-handed alpha
Helix 45	45	K	145	155	Right-handed alpha
Helix 46	46	K	158	171	Right-handed alpha
Helix 47	47	L	65	72	Right-handed alpha
Helix 48	48	L	73	80	Right-handed 310
Helix 49	49	L	104	113	Right-handed alpha
Helix 50	50	L	125	127	Right-handed 310
Helix 51	51	L	187	196	Right-handed alpha
Helix 52	52	M	39	58	Right-handed alpha
Helix 53	53	M	74	127	Right-handed alpha
Helix 54	54	M	148	155	Right-handed alpha
Helix 55	55	M	158	163	Right-handed alpha
Helix 56	56	M	163	168	Right-handed alpha

There are 65 sheets in PDB entry 4JUL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	22	27	anti-parallel
Strand 3	A	12	17	anti-parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	130	132	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	35	35	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	315	317	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	294	295	parallel
Strand 3	A	307	308	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	87	89	parallel
Strand 3	A	267	269	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	229	237	parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	256	263	anti-parallel
Strand 5	A	115	122	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	229	237	parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	251	254	anti-parallel
Strand 5	A	151	153	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	141	first strand
Strand 2	A	144	146	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	210	213	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	288	first strand
Strand 2	A	281	283	anti-parallel
Strand 3	A	302	303	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	36	first strand
Strand 2	D	22	27	anti-parallel
Strand 3	C	12	17	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	132	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	C	35	35	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	315	317	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	294	295	parallel
Strand 3	C	307	308	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	53	first strand
Strand 2	C	274	279	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	87	89	parallel
Strand 3	C	267	269	parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	229	237	parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	256	263	anti-parallel
Strand 5	C	115	122	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	229	237	parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	251	254	anti-parallel
Strand 5	C	151	153	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	155	156	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	141	first strand
Strand 2	C	144	146	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	169	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	202	205	anti-parallel
Strand 4	C	210	213	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	302	303	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	36	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	E	12	17	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	132	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	25	first strand
Strand 2	E	35	35	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	315	317	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	294	295	parallel
Strand 3	E	307	308	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	53	first strand
Strand 2	E	274	278	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	60	first strand
Strand 2	E	87	89	parallel
Strand 3	E	267	269	parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	229	237	parallel
Strand 3	E	175	184	anti-parallel
Strand 4	E	256	263	anti-parallel
Strand 5	E	115	122	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	229	237	parallel
Strand 3	E	175	184	anti-parallel
Strand 4	E	251	254	anti-parallel
Strand 5	E	151	153	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	141	first strand
Strand 2	E	144	146	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	169	first strand
Strand 2	E	242	247	anti-parallel
Strand 3	E	202	205	anti-parallel
Strand 4	E	210	213	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	282	first strand
Strand 2	E	302	303	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	35	36	first strand
Strand 2	I	22	24	anti-parallel
Strand 3	H	12	17	anti-parallel
Strand 4	I	137	140	anti-parallel
Strand 5	I	130	132	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	25	first strand
Strand 2	H	35	35	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	41	first strand
Strand 2	H	315	317	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	44	first strand
Strand 2	H	294	295	parallel
Strand 3	H	307	308	parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	53	first strand
Strand 2	H	274	279	parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	87	89	parallel
Strand 3	H	267	269	parallel

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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	115	122	first strand
Strand 2	H	256	263	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	251	254	anti-parallel
Strand 5	H	151	153	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	115	122	first strand
Strand 2	H	256	263	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	229	237	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	141	first strand
Strand 2	H	144	146	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	169	first strand
Strand 2	H	242	247	anti-parallel
Strand 3	H	202	205	anti-parallel
Strand 4	H	210	213	anti-parallel

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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	286	288	first strand
Strand 2	H	281	283	anti-parallel
Strand 3	H	302	303	anti-parallel

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There are 5 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	31	36	first strand
Strand 2	K	22	28	anti-parallel
Strand 3	J	12	17	anti-parallel
Strand 4	K	137	140	anti-parallel
Strand 5	K	130	132	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	24	25	first strand
Strand 2	J	35	35	anti-parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	41	first strand
Strand 2	J	315	317	anti-parallel

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There are 2 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	53	first strand
Strand 2	J	274	279	parallel

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There are 3 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	59	60	first strand
Strand 2	J	87	89	parallel
Strand 3	J	267	269	parallel

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There are 5 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	102	first strand
Strand 2	J	229	237	parallel
Strand 3	J	175	184	anti-parallel
Strand 4	J	256	263	anti-parallel
Strand 5	J	115	122	anti-parallel

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There are 5 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	102	first strand
Strand 2	J	229	237	parallel
Strand 3	J	175	184	anti-parallel
Strand 4	J	251	254	anti-parallel
Strand 5	J	151	153	anti-parallel

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There are 2 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	136	141	first strand
Strand 2	J	144	146	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	164	169	first strand
Strand 2	J	242	247	anti-parallel
Strand 3	J	202	205	anti-parallel
Strand 4	J	210	213	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	286	287	first strand
Strand 2	J	281	283	anti-parallel
Strand 3	J	302	303	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	294	295	first strand
Strand 2	J	307	308	parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	31	36	first strand
Strand 2	M	22	28	anti-parallel
Strand 3	L	13	17	anti-parallel
Strand 4	M	137	140	anti-parallel
Strand 5	M	130	132	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	24	25	first strand
Strand 2	L	35	35	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	39	41	first strand
Strand 2	L	315	317	anti-parallel

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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	44	first strand
Strand 2	L	294	295	parallel
Strand 3	L	307	308	parallel

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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	59	60	first strand
Strand 2	L	87	89	parallel
Strand 3	L	267	269	parallel

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There are 5 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	100	102	first strand
Strand 2	L	229	237	parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	256	263	anti-parallel
Strand 5	L	115	122	anti-parallel

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There are 5 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	100	102	first strand
Strand 2	L	229	237	parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	251	254	anti-parallel
Strand 5	L	151	153	anti-parallel

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There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	136	141	first strand
Strand 2	L	144	146	anti-parallel

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There are 4 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	164	169	first strand
Strand 2	L	242	247	anti-parallel
Strand 3	L	202	205	anti-parallel
Strand 4	L	210	213	anti-parallel

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There are 3 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	286	287	first strand
Strand 2	L	281	283	anti-parallel
Strand 3	L	302	303	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JUL

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JUL