Analysis of interatomic Contacts of Structural Units in PDB entry:
4JUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JUT entry

There are 8 chains in PDB entry 4JUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 61PRO 148
B
 PRO 63ALA 146
C
 VAL 60ALA 149
D
 VAL 64ALA 147
E
 ALA 61PRO 148
F
 LEU 62ALA 147
G
 ALA 61PRO 148
H
 ALA 61ALA 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 4JUT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 86Right-handed 310
Helix 2
2
A
128 132Right-handed 310
Helix 3
3
B
84 86Right-handed 310
Helix 4
4
B
128 132Right-handed 310
Helix 5
5
C
84 86Right-handed 310
Helix 6
6
C
128 130Right-handed 310
Helix 7
7
D
84 86Right-handed 310
Helix 8
8
E
84 86Right-handed 310
Helix 9
9
E
128 130Right-handed 310
Helix 10
10
F
84 86Right-handed 310
Helix 11
11
G
84 86Right-handed 310
Helix 12
12
G
128 132Right-handed 310
Helix 13
13
H
84 86Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 4JUT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
D
88 93anti-parallel
Strand 3
D
96 107anti-parallel
Strand 4
D
112 122anti-parallel
Strand 5
C
111 122anti-parallel
Strand 6
C
96 108anti-parallel
Strand 7
C
88 93anti-parallel
Strand 8
B
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
133 136anti-parallel
Strand 4
D
69 71parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
B
88 93anti-parallel
Strand 3
B
96 107anti-parallel
Strand 4
B
112 122anti-parallel
Strand 5
A
111 122anti-parallel
Strand 6
A
96 107anti-parallel
Strand 7
A
88 93anti-parallel
Strand 8
D
65 66anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
C
132 136parallel
Strand 3
C
141 146anti-parallel
Strand 4
C
74 79anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
141 145anti-parallel
Strand 3
B
133 136anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
74 79first strand
Strand 2
D
141 146anti-parallel
Strand 3
D
133 136anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
74 79first strand
Strand 2
E
141 146anti-parallel
Strand 3
E
132 136anti-parallel
Strand 4
H
69 71parallel
Back to list of sheets
Back to top of page

There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
62 63first strand
Strand 2
F
88 93anti-parallel
Strand 3
F
96 108anti-parallel
Strand 4
F
111 122anti-parallel
Strand 5
E
111 122anti-parallel
Strand 6
E
96 108anti-parallel
Strand 7
E
88 93anti-parallel
Strand 8
H
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
64 66first strand
Strand 2
G
88 93anti-parallel
Strand 3
G
96 107anti-parallel
Strand 4
G
111 122anti-parallel
Strand 5
H
112 122anti-parallel
Strand 6
H
96 107anti-parallel
Strand 7
H
88 93anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
69 71first strand
Strand 2
G
133 136parallel
Strand 3
G
141 146anti-parallel
Strand 4
G
74 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
75 79first strand
Strand 2
F
141 145anti-parallel
Strand 3
F
133 136anti-parallel
Strand 4
G
66 67parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
75 79first strand
Strand 2
H
141 145anti-parallel
Strand 3
H
133 136anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il