Analysis of interatomic Contacts of Structural Units in PDB entry:
4JUU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JUU entry

There are 2 chains in PDB entry 4JUU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -2ALA 312
B
 HIS 2ALA 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4JUU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 42Right-handed alpha
Helix 2
2
A
42 51Right-handed alpha
Helix 3
3
A
88 102Right-handed alpha
Helix 4
4
A
175 177Right-handed 310
Helix 5
5
A
178 197Right-handed alpha
Helix 6
6
A
200 204Right-handed 310
Helix 7
7
A
238 252Right-handed alpha
Helix 8
8
B
30 42Right-handed alpha
Helix 9
9
B
42 51Right-handed alpha
Helix 10
10
B
88 102Right-handed alpha
Helix 11
11
B
175 177Right-handed 310
Helix 12
12
B
178 197Right-handed alpha
Helix 13
13
B
200 204Right-handed 310
Helix 14
14
B
238 252Right-handed alpha
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There are 3 sheets in PDB entry 4JUU. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 22 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
270 278anti-parallel
Strand 3
A
281 288anti-parallel
Strand 4
A
129 132anti-parallel
Strand 5
A
117 123anti-parallel
Strand 6
A
108 114anti-parallel
Strand 7
A
74 79parallel
Strand 8
A
60 65anti-parallel
Strand 9
A
14 21parallel
Strand 10
A
2 11anti-parallel
Strand 11
A
290 300anti-parallel
Strand 12
B
290 299anti-parallel
Strand 13
B
3 11anti-parallel
Strand 14
B
14 21anti-parallel
Strand 15
B
60 65parallel
Strand 16
B
74 79anti-parallel
Strand 17
B
108 114parallel
Strand 18
B
117 123anti-parallel
Strand 19
B
129 132anti-parallel
Strand 20
B
281 288anti-parallel
Strand 21
B
270 278anti-parallel
Strand 22
B
261 264anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 147first strand
Strand 2
A
151 159anti-parallel
Strand 3
A
163 167anti-parallel
Strand 4
A
208 214parallel
Strand 5
A
222 227anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 147first strand
Strand 2
B
151 159anti-parallel
Strand 3
B
163 167anti-parallel
Strand 4
B
208 214parallel
Strand 5
B
222 227anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il