Analysis of interatomic Contacts of Structural Units in PDB entry:
4JV3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JV3 entry

There are 2 chains in PDB entry 4JV3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 160
A
 ALA 162GLY 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4JV3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
36 43Right-handed alpha
Helix 3
3
A
55 59Right-handed 310
Helix 4
4
A
61 66Right-handed alpha
Helix 5
5
A
69 87Right-handed alpha
Helix 6
6
A
89 94Right-handed alpha
Helix 7
7
A
108 123Right-handed alpha
Helix 8
8
A
124 128Right-handed 310
Helix 9
9
A
131 136Right-handed alpha
Helix 10
10
A
138 148Right-handed alpha
Helix 11
11
A
159 161Right-handed 310
Helix 12
12
A
162 177Right-handed alpha
Helix 13
13
A
192 203Right-handed alpha
Helix 14
14
A
212 216Right-handed 310
Helix 15
15
A
241 247Right-handed alpha
Helix 16
16
A
272 284Right-handed alpha
Helix 17
17
A
303 316Right-handed alpha
Helix 18
18
A
317 321Right-handed 310
Helix 19
19
A
327 332Right-handed alpha
Helix 20
20
A
334 336Right-handed 310
Helix 21
21
A
337 353Right-handed alpha
Helix 22
22
A
365 369Right-handed 310
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There are 3 sheets in PDB entry 4JV3. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
98 104parallel
Strand 3
A
182 189parallel
Strand 4
A
232 240anti-parallel
Strand 5
A
4 12anti-parallel
Strand 6
A
253 262anti-parallel
Strand 7
A
396 403anti-parallel
Strand 8
A
385 392anti-parallel
Strand 9
A
292 294parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
48 49anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
378 379anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il