Analysis of interatomic Contacts of Structural Units in PDB entry:
4JV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JV4 entry

There is 1 chain in PDB entry 4JV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 107SER 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4JV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
119 133Right-handed alpha
Helix 2
2
A
134 137Right-handed 310
Helix 3
3
A
140 151Right-handed alpha
Helix 4
4
A
200 205Right-handed alpha
Helix 5
5
A
226 233Right-handed alpha
Helix 6
6
A
233 250Right-handed alpha
Helix 7
7
A
251 256Right-handed 310
Helix 8
8
A
258 269Right-handed alpha
Helix 9
9
A
324 329Right-handed alpha
Helix 10
10
A
349 357Right-handed alpha
Helix 11
11
A
360 367Right-handed alpha
Helix 12
12
A
368 371Right-handed 310
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There are 4 sheets in PDB entry 4JV4. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
219 225anti-parallel
Strand 3
A
171 177anti-parallel
Strand 4
A
197 198anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
187 192anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
336 347anti-parallel
Strand 3
A
291 301anti-parallel
Strand 4
A
312 316anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 281first strand
Strand 2
A
336 347anti-parallel
Strand 3
A
291 301anti-parallel
Strand 4
A
321 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il