Analysis of interatomic Contacts of Structural Units in PDB entry:
4JVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JVD entry

There is 1 chain in PDB entry 4JVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 94GLY 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4JVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
108 119Right-handed alpha
Helix 2
2
A
128 138Right-handed alpha
Helix 3
3
A
184 189Right-handed alpha
Helix 4
4
A
190 192Right-handed 310
Helix 5
5
A
220 230Right-handed alpha
Helix 6
6
A
239 248Right-handed alpha
Helix 7
7
A
255 258Right-handed 310
Helix 8
8
A
272 276Right-handed 310
Helix 9
9
A
278 293Right-handed alpha
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There are 3 sheets in PDB entry 4JVD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
95 100parallel
Strand 3
A
145 148parallel
Strand 4
A
263 269anti-parallel
Strand 5
A
161 172anti-parallel
Strand 6
A
235 238anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
95 100parallel
Strand 3
A
145 148parallel
Strand 4
A
263 269anti-parallel
Strand 5
A
161 172anti-parallel
Strand 6
A
252 253anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 197first strand
Strand 2
A
215 218parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il