Analysis of interatomic Contacts of Structural Units in PDB entry:
4JVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JVG entry

There are 4 chains in PDB entry 4JVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 448SER 722
A
 ASP 448SER 722
C
 ASP 448SER 722
D
 ASP 448SER 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 4JVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
493 506Right-handed alpha
Helix 2
2
B
536 543Right-handed alpha
Helix 3
3
B
549 570Right-handed alpha
Helix 4
4
B
586 588Right-handed 310
Helix 5
5
B
621 626Right-handed alpha
Helix 6
6
B
634 652Right-handed alpha
Helix 7
7
B
661 672Right-handed alpha
Helix 8
8
B
677 681Right-handed 310
Helix 9
9
B
686 697Right-handed alpha
Helix 10
10
B
700 704Right-handed 310
Helix 11
11
B
706 722Right-handed alpha
Helix 12
12
A
493 506Right-handed alpha
Helix 13
13
A
537 543Right-handed alpha
Helix 14
14
A
549 570Right-handed alpha
Helix 15
15
A
621 626Right-handed alpha
Helix 16
16
A
634 652Right-handed alpha
Helix 17
17
A
661 671Right-handed alpha
Helix 18
18
A
677 681Right-handed 310
Helix 19
19
A
686 697Right-handed alpha
Helix 20
20
A
700 704Right-handed 310
Helix 21
21
A
706 720Right-handed alpha
Helix 22
22
C
491 506Right-handed alpha
Helix 23
23
C
537 543Right-handed alpha
Helix 24
24
C
549 570Right-handed alpha
Helix 25
25
C
578 580Right-handed 310
Helix 26
26
C
621 626Right-handed alpha
Helix 27
27
C
634 652Right-handed alpha
Helix 28
28
C
661 672Right-handed alpha
Helix 29
29
C
686 697Right-handed alpha
Helix 30
30
C
700 704Right-handed 310
Helix 31
31
C
706 722Right-handed alpha
Helix 32
32
D
493 506Right-handed alpha
Helix 33
33
D
537 544Right-handed alpha
Helix 34
34
D
549 570Right-handed alpha
Helix 35
35
D
578 580Right-handed 310
Helix 36
36
D
616 620Right-handed 310
Helix 37
37
D
621 626Right-handed alpha
Helix 38
38
D
634 652Right-handed alpha
Helix 39
39
D
661 671Right-handed alpha
Helix 40
40
D
677 681Right-handed 310
Helix 41
41
D
686 697Right-handed alpha
Helix 42
42
D
700 704Right-handed 310
Helix 43
43
D
706 721Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4JVG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 465first strand
Strand 2
B
470 475anti-parallel
Strand 3
B
479 484anti-parallel
Strand 4
B
526 530anti-parallel
Strand 5
B
516 520anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 585first strand
Strand 2
B
589 592anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 465first strand
Strand 2
A
470 475anti-parallel
Strand 3
A
479 485anti-parallel
Strand 4
A
525 530anti-parallel
Strand 5
A
516 520anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 536first strand
Strand 2
A
582 585anti-parallel
Strand 3
A
589 592anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
458 465first strand
Strand 2
C
470 475anti-parallel
Strand 3
C
479 484anti-parallel
Strand 4
C
526 530anti-parallel
Strand 5
C
516 520anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
534 536first strand
Strand 2
C
582 585anti-parallel
Strand 3
C
589 592anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
458 465first strand
Strand 2
D
470 475anti-parallel
Strand 3
D
479 485anti-parallel
Strand 4
D
525 530anti-parallel
Strand 5
D
516 520anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
534 536first strand
Strand 2
D
582 585anti-parallel
Strand 3
D
589 592anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il