Analysis of interatomic Contacts of Structural Units in PDB entry:
4JVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JVM entry

There are 2 chains in PDB entry 4JVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 2GLU 293
B
SER 3THR 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4JVM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 10Right-handed alpha
Helix 2
2
A
21 25Right-handed alpha
Helix 3
3
A
26 32Right-handed alpha
Helix 4
4
A
49 62Right-handed alpha
Helix 5
5
A
65 70Right-handed alpha
Helix 6
6
A
73 78Right-handed alpha
Helix 7
7
A
91 97Right-handed alpha
Helix 8
8
A
114 120Right-handed alpha
Helix 9
9
A
130 145Right-handed alpha
Helix 10
10
A
153 163Right-handed alpha
Helix 11
11
A
170 182Right-handed alpha
Helix 12
12
A
192 198Right-handed alpha
Helix 13
13
A
198 210Right-handed alpha
Helix 14
14
A
215 226Right-handed alpha
Helix 15
15
A
227 234Right-handed alpha
Helix 16
16
A
261 266Right-handed 310
Helix 17
17
A
268 284Right-handed alpha
Helix 18
18
B
4 9Right-handed alpha
Helix 19
19
B
21 25Right-handed alpha
Helix 20
20
B
26 32Right-handed alpha
Helix 21
21
B
49 62Right-handed alpha
Helix 22
22
B
65 70Right-handed alpha
Helix 23
23
B
73 78Right-handed alpha
Helix 24
24
B
91 97Right-handed alpha
Helix 25
25
B
109 113Right-handed 310
Helix 26
26
B
114 120Right-handed alpha
Helix 27
27
B
130 145Right-handed alpha
Helix 28
28
B
153 164Right-handed alpha
Helix 29
29
B
170 182Right-handed alpha
Helix 30
30
B
192 198Right-handed alpha
Helix 31
31
B
198 210Right-handed alpha
Helix 32
32
B
215 226Right-handed alpha
Helix 33
33
B
227 234Right-handed alpha
Helix 34
34
B
261 266Right-handed 310
Helix 35
35
B
268 284Right-handed alpha
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There are 6 sheets in PDB entry 4JVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 14first strand
Strand 2
A
17 20anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
103 106first strand
Strand 2
A
40 44parallel
Strand 3
A
123 128parallel
Strand 4
A
187 191parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
84 85first strand
Strand 2
A
89 90anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
11 14first strand
Strand 2
B
17 20anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
103 106first strand
Strand 2
B
40 44parallel
Strand 3
B
123 128parallel
Strand 4
B
187 191parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
84 85first strand
Strand 2
B
89 90anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il