Analysis of interatomic Contacts of Structural Units in PDB entry:
4JVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JVW entry

There are 4 chains in PDB entry 4JVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 449	THR 556
B	HIS 448	THR 556
C	LYS 449	THR 556
D	HIS 450	THR 556

There are 11 helices in PDB entry 4JVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	460	465	Right-handed alpha
Helix 2	2	A	496	500	Right-handed 310
Helix 3	3	A	525	530	Right-handed alpha
Helix 4	4	B	460	465	Right-handed alpha
Helix 5	5	B	496	500	Right-handed 310
Helix 6	6	B	525	531	Right-handed alpha
Helix 7	7	C	460	466	Right-handed alpha
Helix 8	8	C	496	498	Right-handed 310
Helix 9	9	C	525	530	Right-handed alpha
Helix 10	10	D	496	498	Right-handed 310
Helix 11	11	D	525	530	Right-handed alpha

There are 12 sheets in PDB entry 4JVW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	501	502	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	547	552	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	469	479	anti-parallel
Strand 3	B	515	524	anti-parallel
Strand 4	B	501	502	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	469	479	anti-parallel
Strand 3	B	515	524	anti-parallel
Strand 4	B	506	507	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	485	490	anti-parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	547	552	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	469	479	anti-parallel
Strand 3	C	515	524	anti-parallel
Strand 4	C	500	502	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	469	479	anti-parallel
Strand 3	C	515	524	anti-parallel
Strand 4	C	506	507	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	494	first strand
Strand 2	C	485	490	anti-parallel
Strand 3	C	534	539	anti-parallel
Strand 4	C	547	552	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	469	479	anti-parallel
Strand 3	D	515	524	anti-parallel
Strand 4	D	500	502	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	469	479	anti-parallel
Strand 3	D	515	524	anti-parallel
Strand 4	D	506	507	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	494	first strand
Strand 2	D	485	490	anti-parallel
Strand 3	D	534	539	anti-parallel
Strand 4	D	547	552	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JVW