Analysis of interatomic Contacts of Structural Units in PDB entry:
4JVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JVY entry

There are 4 chains in PDB entry 4JVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 142SER 332
B
 SER 142LYS 331
D
 C 1 A 7
F
 C 1 A 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4JVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
146 161Right-handed alpha
Helix 2
2
A
167 187Right-handed alpha
Helix 3
3
A
220 227Right-handed alpha
Helix 4
4
A
230 241Right-handed alpha
Helix 5
5
A
254 262Right-handed alpha
Helix 6
6
A
267 272Right-handed 310
Helix 7
7
A
286 302Right-handed alpha
Helix 8
8
A
310 326Right-handed alpha
Helix 9
9
B
146 160Right-handed alpha
Helix 10
10
B
161 163Right-handed 310
Helix 11
11
B
167 187Right-handed alpha
Helix 12
12
B
220 227Right-handed alpha
Helix 13
13
B
230 241Right-handed alpha
Helix 14
14
B
254 262Right-handed alpha
Helix 15
15
B
267 272Right-handed 310
Helix 16
16
B
284 302Right-handed alpha
Helix 17
17
B
310 324Right-handed alpha
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There are 2 sheets in PDB entry 4JVY. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 210first strand
Strand 2
A
275 283anti-parallel
Strand 3
A
243 247anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 210first strand
Strand 2
B
275 283anti-parallel
Strand 3
B
243 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il