Analysis of interatomic Contacts of Structural Units in PDB entry:
4JVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JVZ entry

There are 5 chains in PDB entry 4JVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 94
B
 MET 1SER 94
C
 MET 1THR 97
D
 MET 1ARG 96
E
 MET 1LYS 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4JVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 20Right-handed 310
Helix 2
2
A
61 66Right-handed 310
Helix 3
3
B
16 20Right-handed 310
Helix 4
4
B
61 66Right-handed 310
Helix 5
5
C
17 20Right-handed 310
Helix 6
6
C
32 34Right-handed 310
Helix 7
7
C
61 66Right-handed 310
Helix 8
8
D
17 20Right-handed 310
Helix 9
9
D
61 66Right-handed 310
Helix 10
10
E
17 20Right-handed 310
Helix 11
11
E
61 66Right-handed 310
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There are 7 sheets in PDB entry 4JVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 93first strand
Strand 2
E
84 87anti-parallel
Strand 3
A
2 11anti-parallel
Strand 4
A
54 59anti-parallel
Strand 5
A
76 81anti-parallel
Strand 6
A
36 44parallel
Strand 7
A
24 30anti-parallel
Strand 8
A
2 11anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 94first strand
Strand 2
C
84 87anti-parallel
Strand 3
D
2 11anti-parallel
Strand 4
D
24 30anti-parallel
Strand 5
D
36 45anti-parallel
Strand 6
D
76 86parallel
Strand 7
D
91 94anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 30first strand
Strand 2
D
2 11anti-parallel
Strand 3
D
54 59anti-parallel
Strand 4
D
76 86anti-parallel
Strand 5
E
2 15anti-parallel
Strand 6
E
54 59anti-parallel
Strand 7
E
76 81anti-parallel
Strand 8
A
14 15anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
E
76 81anti-parallel
Strand 3
E
40 45parallel
Strand 4
E
23 29anti-parallel
Strand 5
E
2 15anti-parallel
Strand 6
D
76 86anti-parallel
Strand 7
D
91 94anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
84 87anti-parallel
Strand 3
B
2 11anti-parallel
Strand 4
B
24 30anti-parallel
Strand 5
B
36 45anti-parallel
Strand 6
B
76 87parallel
Strand 7
B
91 93anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 30first strand
Strand 2
B
2 11anti-parallel
Strand 3
B
54 59anti-parallel
Strand 4
B
76 87anti-parallel
Strand 5
C
2 15anti-parallel
Strand 6
C
54 59anti-parallel
Strand 7
C
76 81anti-parallel
Strand 8
D
14 15anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 15first strand
Strand 2
C
76 81anti-parallel
Strand 3
C
36 45parallel
Strand 4
C
24 30anti-parallel
Strand 5
C
2 15anti-parallel
Strand 6
B
76 87anti-parallel
Strand 7
B
91 93anti-parallel
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