Analysis of interatomic Contacts of Structural Units in PDB entry:
4JW1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JW1 entry

There are 2 chains in PDB entry 4JW1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 10SER 617
B
 PHE 48GLN 615
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4JW1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 63Right-handed alpha
Helix 2
2
A
70 74Right-handed 310
Helix 3
3
A
99 103Right-handed alpha
Helix 4
4
A
137 148Right-handed alpha
Helix 5
5
A
221 235Right-handed alpha
Helix 6
6
A
238 252Right-handed alpha
Helix 7
7
A
259 270Right-handed alpha
Helix 8
8
A
272 276Right-handed 310
Helix 9
9
A
286 305Right-handed alpha
Helix 10
10
A
338 353Right-handed alpha
Helix 11
11
A
366 388Right-handed alpha
Helix 12
12
A
424 433Right-handed alpha
Helix 13
13
A
448 454Right-handed alpha
Helix 14
14
A
462 489Right-handed alpha
Helix 15
15
A
492 515Right-handed alpha
Helix 16
16
A
550 562Right-handed alpha
Helix 17
17
A
568 577Right-handed alpha
Helix 18
18
A
577 590Right-handed alpha
Helix 19
19
A
599 614Right-handed alpha
Helix 20
20
B
338 352Right-handed alpha
Helix 21
21
B
366 389Right-handed alpha
Helix 22
22
B
403 407Right-handed 310
Helix 23
23
B
424 434Right-handed alpha
Helix 24
24
B
445 447Right-handed 310
Helix 25
25
B
448 459Right-handed alpha
Helix 26
26
B
463 489Right-handed alpha
Helix 27
27
B
492 512Right-handed alpha
Helix 28
28
B
542 548Right-handed alpha
Helix 29
29
B
550 561Right-handed alpha
Helix 30
30
B
562 564Right-handed 310
Helix 31
31
B
568 576Right-handed alpha
Helix 32
32
B
580 589Right-handed alpha
Helix 33
33
B
599 614Right-handed alpha
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There are 5 sheets in PDB entry 4JW1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
27 29anti-parallel
Strand 3
A
35 39anti-parallel
Strand 4
A
87 92anti-parallel
Strand 5
A
78 81anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
158 161anti-parallel
Strand 3
A
166 168anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 329first strand
Strand 2
A
358 360parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 329first strand
Strand 2
B
359 360parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 414first strand
Strand 2
B
417 418anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il