Analysis of interatomic Contacts of Structural Units in PDB entry:
4JWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JWJ entry

There are 2 chains in PDB entry 4JWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 82PRO 274
B
 HIS 82PRO 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4JWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
103 107Right-handed 310
Helix 2
2
A
108 129Right-handed alpha
Helix 3
3
A
141 151Right-handed alpha
Helix 4
4
A
152 160Right-handed 310
Helix 5
5
A
169 174Right-handed 310
Helix 6
6
A
179 181Right-handed 310
Helix 7
7
A
216 226Right-handed alpha
Helix 8
8
A
234 238Right-handed 310
Helix 9
9
A
247 259Right-handed alpha
Helix 10
10
A
263 272Right-handed alpha
Helix 11
11
B
103 107Right-handed 310
Helix 12
12
B
108 129Right-handed alpha
Helix 13
13
B
141 151Right-handed alpha
Helix 14
14
B
152 160Right-handed 310
Helix 15
15
B
169 174Right-handed 310
Helix 16
16
B
179 181Right-handed 310
Helix 17
17
B
216 226Right-handed alpha
Helix 18
18
B
234 238Right-handed 310
Helix 19
19
B
247 259Right-handed alpha
Helix 20
20
B
263 272Right-handed alpha
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There are 2 sheets in PDB entry 4JWJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
131 138parallel
Strand 3
A
91 100parallel
Strand 4
A
202 206parallel
Strand 5
A
183 186parallel
Strand 6
A
229 230parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
131 138parallel
Strand 3
B
91 100parallel
Strand 4
B
202 206parallel
Strand 5
B
183 186parallel
Strand 6
B
229 230parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il