Analysis of interatomic Contacts of Structural Units in PDB entry:
4JWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JWS entry

There are 4 chains in PDB entry 4JWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10VAL 414
B
 ASN 10VAL 414
C
 SER 1TRP 106
D
 SER 1TRP 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 4JWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
33 36Right-handed 310
Helix 3
3
A
37 43Right-handed alpha
Helix 4
4
A
44 47Right-handed 310
Helix 5
5
A
67 77Right-handed alpha
Helix 6
6
A
104 120Right-handed alpha
Helix 7
7
A
120 143Right-handed alpha
Helix 8
8
A
150 154Right-handed alpha
Helix 9
9
A
156 168Right-handed alpha
Helix 10
10
A
170 172Right-handed 310
Helix 11
11
A
173 186Right-handed alpha
Helix 12
12
A
192 212Right-handed alpha
Helix 13
13
A
218 225Right-handed alpha
Helix 14
14
A
234 248Right-handed alpha
Helix 15
15
A
250 267Right-handed alpha
Helix 16
16
A
267 277Right-handed alpha
Helix 17
17
A
280 292Right-handed alpha
Helix 18
18
A
321 325Right-handed 310
Helix 19
19
A
352 356Right-handed 310
Helix 20
20
A
359 378Right-handed alpha
Helix 21
21
A
407 411Right-handed 310
Helix 22
22
B
19 23Right-handed 310
Helix 23
23
B
33 36Right-handed 310
Helix 24
24
B
37 44Right-handed alpha
Helix 25
25
B
45 47Right-handed 310
Helix 26
26
B
67 77Right-handed alpha
Helix 27
27
B
104 120Right-handed alpha
Helix 28
28
B
120 143Right-handed alpha
Helix 29
29
B
150 154Right-handed alpha
Helix 30
30
B
156 168Right-handed alpha
Helix 31
31
B
170 172Right-handed 310
Helix 32
32
B
173 185Right-handed alpha
Helix 33
33
B
192 214Right-handed alpha
Helix 34
34
B
218 225Right-handed alpha
Helix 35
35
B
234 248Right-handed alpha
Helix 36
36
B
250 267Right-handed alpha
Helix 37
37
B
267 277Right-handed alpha
Helix 38
38
B
280 292Right-handed alpha
Helix 39
39
B
321 325Right-handed 310
Helix 40
40
B
359 378Right-handed alpha
Helix 41
41
B
407 411Right-handed 310
Helix 42
42
C
22 30Right-handed alpha
Helix 43
43
C
64 72Right-handed alpha
Helix 44
44
C
91 95Right-handed 310
Helix 45
45
D
22 30Right-handed alpha
Helix 46
46
D
64 72Right-handed alpha
Helix 47
47
D
91 95Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 4JWS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
62 65anti-parallel
Strand 3
A
317 319parallel
Strand 4
A
298 301anti-parallel
Strand 5
A
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
403 405anti-parallel
Strand 3
A
382 383anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
231 232anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
310 312anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
398 399anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
62 65anti-parallel
Strand 3
B
317 319parallel
Strand 4
B
298 301anti-parallel
Strand 5
B
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 149first strand
Strand 2
B
403 405anti-parallel
Strand 3
B
382 383anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
231 232anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 307first strand
Strand 2
B
310 312anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 392first strand
Strand 2
B
398 399anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
97 100parallel
Strand 4
C
49 52anti-parallel
Strand 5
C
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
97 100parallel
Strand 4
D
49 52anti-parallel
Strand 5
D
82 84anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il