Analysis of interatomic Contacts of Structural Units in PDB entry:
4JWV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JWV entry

There are 2 chains in PDB entry 4JWV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -1LYS 257
B
 ALA 3LYS 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 4JWV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 24Right-handed 310
Helix 2
2
A
28 45Right-handed alpha
Helix 3
3
A
107 114Right-handed alpha
Helix 4
4
A
130 135Right-handed alpha
Helix 5
5
A
143 150Right-handed alpha
Helix 6
6
A
151 162Right-handed alpha
Helix 7
7
A
167 173Right-handed alpha
Helix 8
8
A
181 183Right-handed 310
Helix 9
9
A
184 199Right-handed alpha
Helix 10
10
A
200 214Right-handed alpha
Helix 11
11
A
218 224Right-handed alpha
Helix 12
12
A
227 234Right-handed alpha
Helix 13
13
A
236 248Right-handed alpha
Helix 14
14
B
20 24Right-handed 310
Helix 15
15
B
28 45Right-handed alpha
Helix 16
16
B
107 114Right-handed alpha
Helix 17
17
B
130 135Right-handed alpha
Helix 18
18
B
143 150Right-handed alpha
Helix 19
19
B
151 162Right-handed alpha
Helix 20
20
B
167 173Right-handed alpha
Helix 21
21
B
181 183Right-handed 310
Helix 22
22
B
184 199Right-handed alpha
Helix 23
23
B
200 214Right-handed alpha
Helix 24
24
B
218 224Right-handed alpha
Helix 25
25
B
227 234Right-handed alpha
Helix 26
26
B
236 248Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4JWV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
13 18anti-parallel
Strand 3
A
50 55parallel
Strand 4
A
97 101parallel
Strand 5
A
118 122parallel
Strand 6
A
178 180parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
104 106parallel
Strand 3
A
126 128parallel
Strand 4
A
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
13 18anti-parallel
Strand 3
B
50 55parallel
Strand 4
B
97 101parallel
Strand 5
B
118 122parallel
Strand 6
B
178 180parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
104 106parallel
Strand 3
B
126 128parallel
Strand 4
B
165 166anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il