Analysis of interatomic Contacts of Structural Units in PDB entry:
4JWY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JWY entry

There is 1 chain in PDB entry 4JWY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5HIS 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4JWY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 75Right-handed alpha
Helix 2
2
A
97 105Right-handed alpha
Helix 3
3
A
118 123Right-handed alpha
Helix 4
4
A
151 156Right-handed alpha
Helix 5
5
A
157 160Right-handed 310
Helix 6
6
A
172 182Right-handed alpha
Helix 7
7
A
182 190Right-handed alpha
Helix 8
8
A
191 193Right-handed 310
Helix 9
9
A
196 205Right-handed alpha
Helix 10
10
A
216 225Right-handed alpha
Helix 11
11
A
255 269Right-handed alpha
Helix 12
12
A
270 281Right-handed alpha
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There are 4 sheets in PDB entry 4JWY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
35 39anti-parallel
Strand 4
A
77 82parallel
Strand 5
A
6 11parallel
Strand 6
A
110 111parallel
Strand 7
A
248 249anti-parallel
Strand 8
A
126 127anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
95 96anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
243 245anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
211 215parallel
Strand 3
A
136 141anti-parallel
Strand 4
A
231 235anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il