Analysis of interatomic Contacts of Structural Units in PDB entry:
4JXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JXI entry

There are 2 chains in PDB entry 4JXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LEU 412
B
 MSE 5ARG 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 4JXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 34Right-handed alpha
Helix 2
2
A
48 60Right-handed alpha
Helix 3
3
A
69 71Right-handed 310
Helix 4
4
A
72 77Right-handed alpha
Helix 5
5
A
85 90Right-handed 310
Helix 6
6
A
94 98Right-handed 310
Helix 7
7
A
99 105Right-handed alpha
Helix 8
8
A
128 135Right-handed alpha
Helix 9
9
A
141 156Right-handed alpha
Helix 10
10
A
166 183Right-handed alpha
Helix 11
11
A
197 214Right-handed alpha
Helix 12
12
A
229 233Right-handed 310
Helix 13
13
A
234 239Right-handed alpha
Helix 14
14
A
251 258Right-handed alpha
Helix 15
15
A
297 311Right-handed alpha
Helix 16
16
A
311 319Right-handed alpha
Helix 17
17
A
327 337Right-handed alpha
Helix 18
18
A
344 356Right-handed alpha
Helix 19
19
A
363 367Right-handed 310
Helix 20
20
A
368 384Right-handed alpha
Helix 21
21
A
388 409Right-handed alpha
Helix 22
22
B
16 34Right-handed alpha
Helix 23
23
B
48 60Right-handed alpha
Helix 24
24
B
69 71Right-handed 310
Helix 25
25
B
72 77Right-handed alpha
Helix 26
26
B
85 90Right-handed 310
Helix 27
27
B
94 98Right-handed 310
Helix 28
28
B
99 104Right-handed alpha
Helix 29
29
B
128 134Right-handed alpha
Helix 30
30
B
141 156Right-handed alpha
Helix 31
31
B
166 183Right-handed alpha
Helix 32
32
B
197 214Right-handed alpha
Helix 33
33
B
229 233Right-handed 310
Helix 34
34
B
234 239Right-handed alpha
Helix 35
35
B
252 258Right-handed alpha
Helix 36
36
B
297 311Right-handed alpha
Helix 37
37
B
311 319Right-handed alpha
Helix 38
38
B
327 337Right-handed alpha
Helix 39
39
B
344 356Right-handed alpha
Helix 40
40
B
363 367Right-handed 310
Helix 41
41
B
368 384Right-handed alpha
Helix 42
42
B
388 408Right-handed alpha
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There are 8 sheets in PDB entry 4JXI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 44first strand
Strand 2
A
7 14parallel
Strand 3
A
65 68parallel
Strand 4
A
283 291anti-parallel
Strand 5
A
115 127anti-parallel
Strand 6
A
244 248anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 44first strand
Strand 2
A
7 14parallel
Strand 3
A
65 68parallel
Strand 4
A
283 291anti-parallel
Strand 5
A
115 127anti-parallel
Strand 6
A
265 267anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
111 112anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
193 194anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 44first strand
Strand 2
B
7 14parallel
Strand 3
B
65 68parallel
Strand 4
B
283 291anti-parallel
Strand 5
B
115 127anti-parallel
Strand 6
B
244 248anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 44first strand
Strand 2
B
7 14parallel
Strand 3
B
65 68parallel
Strand 4
B
283 291anti-parallel
Strand 5
B
115 127anti-parallel
Strand 6
B
265 267anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
111 112anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
193 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il