Analysis of interatomic Contacts of Structural Units in PDB entry:
4JXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JXU entry

There are 4 chains in PDB entry 4JXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 156
A
 ALA 158ALA 289
B
 ALA 2ALA 156
B
 ALA 158GLU 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4JXU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 37Right-handed alpha
Helix 2
2
A
53 68Right-handed alpha
Helix 3
3
A
75 88Right-handed alpha
Helix 4
4
A
115 117Right-handed 310
Helix 5
5
A
158 160Right-handed 310
Helix 6
6
A
161 175Right-handed alpha
Helix 7
7
A
217 230Right-handed alpha
Helix 8
8
A
240 246Right-handed alpha
Helix 9
9
A
273 289Right-handed alpha
Helix 10
10
B
31 36Right-handed alpha
Helix 11
11
B
53 68Right-handed alpha
Helix 12
12
B
75 88Right-handed alpha
Helix 13
13
B
115 117Right-handed 310
Helix 14
14
B
158 160Right-handed 310
Helix 15
15
B
161 175Right-handed alpha
Helix 16
16
B
217 230Right-handed alpha
Helix 17
17
B
240 246Right-handed alpha
Helix 18
18
B
273 291Right-handed alpha
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There are 8 sheets in PDB entry 4JXU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
11 15anti-parallel
Strand 3
A
119 127anti-parallel
Strand 4
A
96 104anti-parallel
Strand 5
A
39 41anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
11 15anti-parallel
Strand 3
A
119 127anti-parallel
Strand 4
A
96 104anti-parallel
Strand 5
A
44 46anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
179 183anti-parallel
Strand 3
A
137 145parallel
Strand 4
A
258 265parallel
Strand 5
A
249 254anti-parallel
Strand 6
A
195 201anti-parallel
Strand 7
A
204 208anti-parallel
Strand 8
A
234 237parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
179 183anti-parallel
Strand 3
A
137 145parallel
Strand 4
A
258 265parallel
Strand 5
A
268 269anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 21first strand
Strand 2
B
11 15anti-parallel
Strand 3
B
119 127anti-parallel
Strand 4
B
96 104anti-parallel
Strand 5
B
39 41anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 21first strand
Strand 2
B
11 15anti-parallel
Strand 3
B
119 127anti-parallel
Strand 4
B
96 104anti-parallel
Strand 5
B
44 46anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 192first strand
Strand 2
B
179 183anti-parallel
Strand 3
B
138 145parallel
Strand 4
B
264 265parallel
Strand 5
B
268 269anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 237first strand
Strand 2
B
204 208parallel
Strand 3
B
195 201anti-parallel
Strand 4
B
249 254anti-parallel
Strand 5
B
258 261anti-parallel
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