Analysis of interatomic Contacts of Structural Units in PDB entry:
4JY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JY2 entry

There are 2 chains in PDB entry 4JY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10GLN 379
B
 LYS 10GLN 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4JY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
57 66Right-handed alpha
Helix 3
3
A
68 74Right-handed alpha
Helix 4
4
A
95 99Right-handed 310
Helix 5
5
A
106 120Right-handed alpha
Helix 6
6
A
160 167Right-handed alpha
Helix 7
7
A
188 192Right-handed 310
Helix 8
8
A
241 249Right-handed alpha
Helix 9
9
A
252 260Right-handed alpha
Helix 10
10
A
287 292Right-handed alpha
Helix 11
11
A
299 315Right-handed alpha
Helix 12
12
A
320 350Right-handed alpha
Helix 13
13
A
351 355Right-handed 310
Helix 14
14
A
363 367Right-handed alpha
Helix 15
15
B
20 33Right-handed alpha
Helix 16
16
B
57 66Right-handed alpha
Helix 17
17
B
68 74Right-handed alpha
Helix 18
18
B
95 99Right-handed 310
Helix 19
19
B
106 120Right-handed alpha
Helix 20
20
B
160 165Right-handed alpha
Helix 21
21
B
188 192Right-handed 310
Helix 22
22
B
241 249Right-handed alpha
Helix 23
23
B
252 260Right-handed alpha
Helix 24
24
B
287 292Right-handed alpha
Helix 25
25
B
299 315Right-handed alpha
Helix 26
26
B
320 350Right-handed alpha
Helix 27
27
B
351 355Right-handed 310
Helix 28
28
B
363 367Right-handed alpha
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There are 12 sheets in PDB entry 4JY2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
36 40parallel
Strand 3
A
13 17parallel
Strand 4
A
151 154parallel
Strand 5
A
283 285parallel
Strand 6
A
279 280anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
101 105anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 94first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
199 203parallel
Strand 4
A
211 216anti-parallel
Strand 5
A
221 228anti-parallel
Strand 6
A
178 185anti-parallel
Strand 7
A
267 268anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
138 141anti-parallel
Strand 3
A
146 148anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
271 275anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
374 375anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
36 40parallel
Strand 3
B
13 17parallel
Strand 4
B
151 154parallel
Strand 5
B
283 285parallel
Strand 6
B
279 280anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
101 105anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 94first strand
Strand 2
B
82 86anti-parallel
Strand 3
B
199 203parallel
Strand 4
B
211 216anti-parallel
Strand 5
B
221 228anti-parallel
Strand 6
B
178 185anti-parallel
Strand 7
B
267 268anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 134first strand
Strand 2
B
138 141anti-parallel
Strand 3
B
146 148anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 174first strand
Strand 2
B
271 275anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
374 375anti-parallel
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