Analysis of interatomic Contacts of Structural Units in PDB entry:
4JY6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JY6 entry

There are 4 chains in PDB entry 4JY6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 8	THR 213
B	GLN 1	LYS 212
C	SER 8	THR 210
D	GLN 1	SER 213

There are 18 helices in PDB entry 4JY6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	79	83	Right-handed 310
Helix 2	2	A	125	131	Right-handed alpha
Helix 3	3	A	185	191	Right-handed alpha
Helix 4	4	B	28	32	Right-handed 310
Helix 5	5	B	83	87	Right-handed 310
Helix 6	6	B	100	100	Right-handed 310
Helix 7	7	B	185	187	Right-handed 310
Helix 8	8	B	199	202	Right-handed 310
Helix 9	9	C	79	83	Right-handed 310
Helix 10	10	C	122	128	Right-handed alpha
Helix 11	11	C	182	187	Right-handed alpha
Helix 12	12	D	28	32	Right-handed 310
Helix 13	13	D	63	65	Right-handed 310
Helix 14	14	D	83	87	Right-handed 310
Helix 15	15	D	100	100	Right-handed 310
Helix 16	16	D	154	156	Right-handed 310
Helix 17	17	D	185	187	Right-handed 310
Helix 18	18	D	199	202	Right-handed 310

There are 24 sheets in PDB entry 4JY6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	102	109	parallel
Strand 3	A	84	92	anti-parallel
Strand 4	A	31	38	anti-parallel
Strand 5	A	45	48	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	102	109	parallel
Strand 3	A	84	92	anti-parallel
Strand 4	A	98	98	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	23	first strand
Strand 2	A	71	75	anti-parallel
Strand 3	A	62	64	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	122	first strand
Strand 2	A	134	143	anti-parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	163	165	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	122	first strand
Strand 2	A	134	143	anti-parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	169	170	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	149	154	anti-parallel
Strand 3	A	195	200	anti-parallel
Strand 4	A	205	210	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	105	109	parallel
Strand 3	B	88	100	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	58	59	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	105	109	parallel
Strand 3	B	88	100	anti-parallel
Strand 4	B	100	101	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	174	183	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	174	183	anti-parallel
Strand 4	B	167	168	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	192	198	anti-parallel
Strand 3	B	203	209	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	99	106	parallel
Strand 3	C	84	92	anti-parallel
Strand 4	C	31	38	anti-parallel
Strand 5	C	45	48	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	99	106	parallel
Strand 3	C	84	92	anti-parallel
Strand 4	C	95	95	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	23	first strand
Strand 2	C	71	75	anti-parallel
Strand 3	C	62	64	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	131	140	anti-parallel
Strand 3	C	173	181	anti-parallel
Strand 4	C	160	162	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	131	140	anti-parallel
Strand 3	C	173	181	anti-parallel
Strand 4	C	166	167	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	192	198	anti-parallel
Strand 3	C	201	207	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	88	100	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	59	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	88	100	anti-parallel
Strand 4	D	100	101	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	133	143	anti-parallel
Strand 3	D	174	183	anti-parallel
Strand 4	D	161	163	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	133	143	anti-parallel
Strand 3	D	174	183	anti-parallel
Strand 4	D	167	168	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	152	first strand
Strand 2	D	193	198	anti-parallel
Strand 3	D	203	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JY6

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JY6