Analysis of interatomic Contacts of Structural Units in PDB entry:
4JYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JYC entry

There are 4 chains in PDB entry 4JYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6ILE 327
B
 ALA 3GLY 328
C
 PRO 6LEU 329
D
 PRO 6ILE 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 4JYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 17Right-handed alpha
Helix 2
2
A
19 32Right-handed alpha
Helix 3
3
A
34 49Right-handed alpha
Helix 4
4
A
50 52Right-handed 310
Helix 5
5
A
67 82Right-handed alpha
Helix 6
6
A
92 97Right-handed 310
Helix 7
7
A
105 108Right-handed 310
Helix 8
8
A
109 115Right-handed alpha
Helix 9
9
A
128 146Right-handed alpha
Helix 10
10
A
161 167Right-handed alpha
Helix 11
11
A
189 195Right-handed alpha
Helix 12
12
A
208 225Right-handed alpha
Helix 13
13
A
247 265Right-handed alpha
Helix 14
14
A
266 293Right-handed alpha
Helix 15
15
A
295 311Right-handed alpha
Helix 16
16
A
315 327Right-handed alpha
Helix 17
17
B
7 17Right-handed alpha
Helix 18
18
B
19 32Right-handed alpha
Helix 19
19
B
34 49Right-handed alpha
Helix 20
20
B
50 52Right-handed 310
Helix 21
21
B
65 82Right-handed alpha
Helix 22
22
B
92 97Right-handed 310
Helix 23
23
B
105 109Right-handed 310
Helix 24
24
B
111 115Right-handed 310
Helix 25
25
B
128 146Right-handed alpha
Helix 26
26
B
161 167Right-handed alpha
Helix 27
27
B
188 195Right-handed 310
Helix 28
28
B
209 227Right-handed alpha
Helix 29
29
B
247 265Right-handed alpha
Helix 30
30
B
266 292Right-handed alpha
Helix 31
31
B
295 311Right-handed alpha
Helix 32
32
B
315 328Right-handed alpha
Helix 33
33
C
7 17Right-handed alpha
Helix 34
34
C
19 32Right-handed alpha
Helix 35
35
C
34 49Right-handed alpha
Helix 36
36
C
50 52Right-handed 310
Helix 37
37
C
64 82Right-handed alpha
Helix 38
38
C
92 98Right-handed 310
Helix 39
39
C
109 114Right-handed alpha
Helix 40
40
C
128 146Right-handed alpha
Helix 41
41
C
161 167Right-handed alpha
Helix 42
42
C
191 195Right-handed 310
Helix 43
43
C
208 227Right-handed alpha
Helix 44
44
C
247 265Right-handed alpha
Helix 45
45
C
266 291Right-handed alpha
Helix 46
46
C
292 294Right-handed 310
Helix 47
47
C
295 311Right-handed alpha
Helix 48
48
C
315 326Right-handed alpha
Helix 49
49
D
7 17Right-handed alpha
Helix 50
50
D
19 32Right-handed alpha
Helix 51
51
D
36 48Right-handed alpha
Helix 52
52
D
49 52Right-handed 310
Helix 53
53
D
67 82Right-handed alpha
Helix 54
54
D
92 97Right-handed 310
Helix 55
55
D
111 115Right-handed 310
Helix 56
56
D
128 146Right-handed alpha
Helix 57
57
D
161 167Right-handed alpha
Helix 58
58
D
180 184Right-handed 310
Helix 59
59
D
206 226Right-handed alpha
Helix 60
60
D
247 265Right-handed alpha
Helix 61
61
D
266 293Right-handed alpha
Helix 62
62
D
295 311Right-handed alpha
Helix 63
63
D
315 327Right-handed alpha
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There are 4 sheets in PDB entry 4JYC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
86 91parallel
Strand 3
A
150 155parallel
Strand 4
A
56 62parallel
Strand 5
A
171 176parallel
Strand 6
A
197 201parallel
Strand 7
A
237 240parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 121first strand
Strand 2
B
86 91parallel
Strand 3
B
150 155parallel
Strand 4
B
56 61parallel
Strand 5
B
171 176parallel
Strand 6
B
197 201parallel
Strand 7
B
237 240parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 121first strand
Strand 2
C
86 91parallel
Strand 3
C
150 155parallel
Strand 4
C
56 61parallel
Strand 5
C
171 176parallel
Strand 6
C
197 201parallel
Strand 7
C
237 240parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 121first strand
Strand 2
D
86 91parallel
Strand 3
D
150 155parallel
Strand 4
D
56 61parallel
Strand 5
D
171 176parallel
Strand 6
D
197 200parallel
Strand 7
D
237 239parallel
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