Analysis of interatomic Contacts of Structural Units in PDB entry:
4JYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JYD entry

There are 2 chains in PDB entry 4JYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 113
A
 MET 115THR 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4JYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
16 26Right-handed alpha
Helix 3
3
A
28 48Right-handed alpha
Helix 4
4
A
85 99Right-handed alpha
Helix 5
5
A
111 115Right-handed 310
Helix 6
6
A
116 128Right-handed alpha
Helix 7
7
A
141 151Right-handed alpha
Helix 8
8
A
164 172Right-handed alpha
Helix 9
9
A
176 191Right-handed alpha
Helix 10
10
A
206 221Right-handed alpha
Helix 11
11
A
245 260Right-handed alpha
Helix 12
12
A
268 275Right-handed alpha
Helix 13
13
A
277 284Right-handed alpha
Helix 14
14
A
299 303Right-handed 310
Helix 15
15
A
318 330Right-handed alpha
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There are 3 sheets in PDB entry 4JYD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
193 196parallel
Strand 3
A
155 157parallel
Strand 4
A
132 136parallel
Strand 5
A
103 108parallel
Strand 6
A
50 60parallel
Strand 7
A
289 290parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
193 196parallel
Strand 3
A
155 157parallel
Strand 4
A
132 136parallel
Strand 5
A
103 108parallel
Strand 6
A
50 60parallel
Strand 7
A
333 334parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
228 229parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il