Analysis of interatomic Contacts of Structural Units in PDB entry:
4JYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JYJ entry

There are 2 chains in PDB entry 4JYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6GLY 275
B
 GLY 7GLY 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4JYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 27Right-handed 310
Helix 2
2
A
31 45Right-handed alpha
Helix 3
3
A
67 71Right-handed 310
Helix 4
4
A
72 75Right-handed 310
Helix 5
5
A
76 97Right-handed alpha
Helix 6
6
A
112 117Right-handed alpha
Helix 7
7
A
118 120Right-handed 310
Helix 8
8
A
143 146Right-handed 310
Helix 9
9
A
147 152Right-handed alpha
Helix 10
10
A
152 162Right-handed alpha
Helix 11
11
A
169 175Right-handed alpha
Helix 12
12
A
183 185Right-handed 310
Helix 13
13
A
186 199Right-handed alpha
Helix 14
14
A
202 220Right-handed alpha
Helix 15
15
A
223 227Right-handed 310
Helix 16
16
A
228 237Right-handed alpha
Helix 17
17
A
239 252Right-handed alpha
Helix 18
18
A
253 260Right-handed alpha
Helix 19
19
A
265 273Right-handed alpha
Helix 20
20
B
23 27Right-handed 310
Helix 21
21
B
31 45Right-handed alpha
Helix 22
22
B
67 71Right-handed 310
Helix 23
23
B
72 75Right-handed 310
Helix 24
24
B
76 96Right-handed alpha
Helix 25
25
B
112 117Right-handed alpha
Helix 26
26
B
118 120Right-handed 310
Helix 27
27
B
143 146Right-handed 310
Helix 28
28
B
147 152Right-handed alpha
Helix 29
29
B
152 162Right-handed alpha
Helix 30
30
B
169 175Right-handed alpha
Helix 31
31
B
183 185Right-handed 310
Helix 32
32
B
186 199Right-handed alpha
Helix 33
33
B
202 220Right-handed alpha
Helix 34
34
B
223 227Right-handed 310
Helix 35
35
B
228 238Right-handed alpha
Helix 36
36
B
239 252Right-handed alpha
Helix 37
37
B
253 260Right-handed alpha
Helix 38
38
B
265 273Right-handed alpha
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There are 4 sheets in PDB entry 4JYJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
52 57parallel
Strand 4
A
101 105parallel
Strand 5
A
122 126parallel
Strand 6
A
180 182parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
130 132parallel
Strand 3
A
166 168anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
16 21anti-parallel
Strand 3
B
52 57parallel
Strand 4
B
101 105parallel
Strand 5
B
122 126parallel
Strand 6
B
180 182parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
130 132parallel
Strand 3
B
166 168anti-parallel
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