Analysis of interatomic Contacts of Structural Units in PDB entry:
4JYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JYK entry

There are 2 chains in PDB entry 4JYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 12ARG 212
B
 SER 17ARG 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4JYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 35Right-handed alpha
Helix 2
2
A
40 49Right-handed alpha
Helix 3
3
A
51 59Right-handed alpha
Helix 4
4
A
61 83Right-handed alpha
Helix 5
5
A
89 108Right-handed alpha
Helix 6
6
A
108 121Right-handed alpha
Helix 7
7
A
126 132Right-handed alpha
Helix 8
8
A
132 151Right-handed alpha
Helix 9
9
A
158 176Right-handed alpha
Helix 10
10
A
176 185Right-handed alpha
Helix 11
11
A
190 210Right-handed alpha
Helix 12
12
B
18 39Right-handed alpha
Helix 13
13
B
40 49Right-handed alpha
Helix 14
14
B
51 59Right-handed alpha
Helix 15
15
B
61 83Right-handed alpha
Helix 16
16
B
89 108Right-handed alpha
Helix 17
17
B
108 121Right-handed alpha
Helix 18
18
B
126 132Right-handed alpha
Helix 19
19
B
132 151Right-handed alpha
Helix 20
20
B
158 176Right-handed alpha
Helix 21
21
B
176 185Right-handed alpha
Helix 22
22
B
190 210Right-handed alpha
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There are no sheets in PDB entry 4JYK
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il