Analysis of interatomic Contacts of Structural Units in PDB entry:
4JYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JYL entry

There are 6 chains in PDB entry 4JYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -5LYS 243
B
 ASN -5LYS 243
C
 LEU -4LYS 243
D
 SER 0ARG 242
E
 LEU -4LYS 243
F
 MSE 1PHE 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 4JYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 22Right-handed 310
Helix 2
2
A
26 43Right-handed alpha
Helix 3
3
A
62 68Right-handed alpha
Helix 4
4
A
70 91Right-handed alpha
Helix 5
5
A
105 114Right-handed alpha
Helix 6
6
A
128 133Right-handed 310
Helix 7
7
A
143 149Right-handed alpha
Helix 8
8
A
149 160Right-handed alpha
Helix 9
9
A
164 171Right-handed alpha
Helix 10
10
A
180 193Right-handed alpha
Helix 11
11
A
195 209Right-handed alpha
Helix 12
12
A
210 212Right-handed 310
Helix 13
13
A
213 228Right-handed alpha
Helix 14
14
A
231 239Right-handed alpha
Helix 15
15
A
240 242Right-handed 310
Helix 16
16
B
18 22Right-handed 310
Helix 17
17
B
26 43Right-handed alpha
Helix 18
18
B
62 69Right-handed alpha
Helix 19
19
B
70 91Right-handed alpha
Helix 20
20
B
105 114Right-handed alpha
Helix 21
21
B
128 133Right-handed 310
Helix 22
22
B
143 149Right-handed alpha
Helix 23
23
B
149 160Right-handed alpha
Helix 24
24
B
164 171Right-handed alpha
Helix 25
25
B
180 193Right-handed alpha
Helix 26
26
B
195 210Right-handed alpha
Helix 27
27
B
213 229Right-handed alpha
Helix 28
28
B
231 239Right-handed alpha
Helix 29
29
B
240 242Right-handed 310
Helix 30
30
C
-4 1Right-handed 310
Helix 31
31
C
18 22Right-handed 310
Helix 32
32
C
26 43Right-handed alpha
Helix 33
33
C
62 68Right-handed alpha
Helix 34
34
C
70 91Right-handed alpha
Helix 35
35
C
105 114Right-handed alpha
Helix 36
36
C
128 133Right-handed 310
Helix 37
37
C
143 149Right-handed alpha
Helix 38
38
C
149 160Right-handed alpha
Helix 39
39
C
165 171Right-handed alpha
Helix 40
40
C
180 193Right-handed alpha
Helix 41
41
C
195 210Right-handed alpha
Helix 42
42
C
213 229Right-handed alpha
Helix 43
43
C
231 239Right-handed alpha
Helix 44
44
C
240 242Right-handed 310
Helix 45
45
D
18 22Right-handed 310
Helix 46
46
D
26 43Right-handed alpha
Helix 47
47
D
62 69Right-handed alpha
Helix 48
48
D
70 91Right-handed alpha
Helix 49
49
D
105 114Right-handed alpha
Helix 50
50
D
128 133Right-handed 310
Helix 51
51
D
143 149Right-handed alpha
Helix 52
52
D
149 160Right-handed alpha
Helix 53
53
D
164 171Right-handed alpha
Helix 54
54
D
180 193Right-handed alpha
Helix 55
55
D
195 209Right-handed alpha
Helix 56
56
D
210 212Right-handed 310
Helix 57
57
D
213 229Right-handed alpha
Helix 58
58
D
231 239Right-handed alpha
Helix 59
59
D
240 242Right-handed 310
Helix 60
60
E
18 22Right-handed 310
Helix 61
61
E
26 43Right-handed alpha
Helix 62
62
E
62 68Right-handed alpha
Helix 63
63
E
70 91Right-handed alpha
Helix 64
64
E
105 114Right-handed alpha
Helix 65
65
E
128 133Right-handed 310
Helix 66
66
E
143 149Right-handed alpha
Helix 67
67
E
149 160Right-handed alpha
Helix 68
68
E
165 171Right-handed alpha
Helix 69
69
E
180 193Right-handed alpha
Helix 70
70
E
195 209Right-handed alpha
Helix 71
71
E
210 212Right-handed 310
Helix 72
72
E
213 229Right-handed alpha
Helix 73
73
E
231 239Right-handed alpha
Helix 74
74
E
240 242Right-handed 310
Helix 75
75
F
18 22Right-handed 310
Helix 76
76
F
26 43Right-handed alpha
Helix 77
77
F
62 68Right-handed alpha
Helix 78
78
F
70 91Right-handed alpha
Helix 79
79
F
105 114Right-handed alpha
Helix 80
80
F
128 133Right-handed 310
Helix 81
81
F
143 149Right-handed alpha
Helix 82
82
F
149 160Right-handed alpha
Helix 83
83
F
164 171Right-handed alpha
Helix 84
84
F
180 193Right-handed alpha
Helix 85
85
F
195 209Right-handed alpha
Helix 86
86
F
210 212Right-handed 310
Helix 87
87
F
213 229Right-handed alpha
Helix 88
88
F
231 239Right-handed alpha
Helix 89
89
F
240 242Right-handed 310
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There are 12 sheets in PDB entry 4JYL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
11 16anti-parallel
Strand 3
A
47 52parallel
Strand 4
A
95 99parallel
Strand 5
A
116 120parallel
Strand 6
A
176 178parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
124 126parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
11 16anti-parallel
Strand 3
B
47 52parallel
Strand 4
B
95 99parallel
Strand 5
B
116 120parallel
Strand 6
B
176 178parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
124 126parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
11 16anti-parallel
Strand 3
C
47 52parallel
Strand 4
C
95 99parallel
Strand 5
C
116 120parallel
Strand 6
C
176 178parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 104first strand
Strand 2
C
124 126parallel
Strand 3
C
163 164anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 8first strand
Strand 2
D
11 16anti-parallel
Strand 3
D
47 52parallel
Strand 4
D
95 99parallel
Strand 5
D
116 120parallel
Strand 6
D
176 178parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 104first strand
Strand 2
D
124 126parallel
Strand 3
D
162 163anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 8first strand
Strand 2
E
11 16anti-parallel
Strand 3
E
47 52parallel
Strand 4
E
95 99parallel
Strand 5
E
116 120parallel
Strand 6
E
176 178parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
102 104first strand
Strand 2
E
124 126parallel
Strand 3
E
163 164anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 8first strand
Strand 2
F
11 16anti-parallel
Strand 3
F
47 52parallel
Strand 4
F
95 99parallel
Strand 5
F
116 120parallel
Strand 6
F
176 178parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
102 104first strand
Strand 2
F
124 126parallel
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