Analysis of interatomic Contacts of Structural Units in PDB entry:
4JYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JYM entry

There are 2 chains in PDB entry 4JYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ILE 268
B
 GLY 2ILE 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4JYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 8Right-handed alpha
Helix 2
2
A
29 34Right-handed 310
Helix 3
3
A
36 40Right-handed 310
Helix 4
4
A
58 62Right-handed 310
Helix 5
5
A
65 68Right-handed 310
Helix 6
6
A
69 84Right-handed alpha
Helix 7
7
A
95 108Right-handed alpha
Helix 8
8
A
135 149Right-handed alpha
Helix 9
9
A
149 163Right-handed alpha
Helix 10
10
A
168 180Right-handed alpha
Helix 11
11
A
182 195Right-handed alpha
Helix 12
12
A
198 205Right-handed 310
Helix 13
13
A
221 232Right-handed alpha
Helix 14
14
A
247 252Right-handed alpha
Helix 15
15
A
252 266Right-handed alpha
Helix 16
16
B
3 8Right-handed alpha
Helix 17
17
B
29 34Right-handed 310
Helix 18
18
B
36 40Right-handed 310
Helix 19
19
B
58 62Right-handed 310
Helix 20
20
B
65 69Right-handed 310
Helix 21
21
B
70 84Right-handed alpha
Helix 22
22
B
95 108Right-handed alpha
Helix 23
23
B
135 149Right-handed alpha
Helix 24
24
B
149 163Right-handed alpha
Helix 25
25
B
168 181Right-handed alpha
Helix 26
26
B
182 195Right-handed alpha
Helix 27
27
B
198 205Right-handed 310
Helix 28
28
B
221 232Right-handed alpha
Helix 29
29
B
247 252Right-handed alpha
Helix 30
30
B
252 266Right-handed alpha
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There are 2 sheets in PDB entry 4JYM. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
19 23parallel
Strand 4
A
89 94parallel
Strand 5
A
112 118parallel
Strand 6
A
209 216parallel
Strand 7
A
236 244parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
45 48anti-parallel
Strand 3
B
19 23parallel
Strand 4
B
89 94parallel
Strand 5
B
112 118parallel
Strand 6
B
209 216parallel
Strand 7
B
236 244parallel
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