Analysis of interatomic Contacts of Structural Units in PDB entry:
4JYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JYO entry

There is 1 chain in PDB entry 4JYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 PRO 3PHE 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4JYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
6 13Right-handed alpha
Helix 2
2
X
61 68Right-handed alpha
Helix 3
3
X
79 88Right-handed alpha
Helix 4
4
X
117 121Right-handed 310
Helix 5
5
X
159 165Right-handed alpha
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There are 3 sheets in PDB entry 4JYO. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
19 23first strand
Strand 2
X
32 37anti-parallel
Strand 3
X
45 51anti-parallel
Strand 4
X
76 77anti-parallel
Strand 5
X
69 70anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
19 23first strand
Strand 2
X
32 37anti-parallel
Strand 3
X
45 51anti-parallel
Strand 4
X
209 216anti-parallel
Strand 5
X
92 99anti-parallel
Strand 6
X
105 115anti-parallel
Strand 7
X
124 131anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
176 177first strand
Strand 2
X
196 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il