Analysis of interatomic Contacts of Structural Units in PDB entry:
4JYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4JYS entry

There are 2 chains in PDB entry 4JYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 76ILE 207
B
 ASP 76LYS 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4JYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
142 149Right-handed alpha
Helix 2
2
A
163 167Right-handed 310
Helix 3
3
A
195 204Right-handed alpha
Helix 4
4
B
142 149Right-handed alpha
Helix 5
5
B
163 167Right-handed 310
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There are 4 sheets in PDB entry 4JYS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
87 92anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
A
177 187anti-parallel
Strand 5
A
104 113anti-parallel
Strand 6
A
119 122anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
87 92anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
A
177 187anti-parallel
Strand 5
A
104 113anti-parallel
Strand 6
A
131 133anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
87 92anti-parallel
Strand 3
B
157 162anti-parallel
Strand 4
B
177 187anti-parallel
Strand 5
B
104 113anti-parallel
Strand 6
B
119 122anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
87 92anti-parallel
Strand 3
B
157 162anti-parallel
Strand 4
B
177 187anti-parallel
Strand 5
B
104 113anti-parallel
Strand 6
B
131 133anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il