Analysis of interatomic Contacts of Structural Units in PDB entry:
4JZO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4JZO entry

There are 12 chains in PDB entry 4JZO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	PRO 219
B	SER 1	GLY 211
C	VAL 2	PRO 219
D	GLN 1	PRO 219
E	SER 1	GLY 211
F	TYR 2	GLY 211
G	VAL 2	PRO 219
H	TYR 2	GLY 211
I	GLY 436	LYS 446
J	GLY 436	LYS 446
K	GLY 436	LYS 446
L	GLY 436	LYS 446

There are 38 helices in PDB entry 4JZO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	87	91	Right-handed 310
Helix 2	2	A	162	164	Right-handed 310
Helix 3	3	A	193	195	Right-handed 310
Helix 4	4	A	207	210	Right-handed 310
Helix 5	5	B	26	30	Right-handed 310
Helix 6	6	B	78	82	Right-handed 310
Helix 7	7	B	120	125	Right-handed alpha
Helix 8	8	B	182	186	Right-handed alpha
Helix 9	9	C	53	56	Right-handed 310
Helix 10	10	C	87	91	Right-handed 310
Helix 11	11	C	162	164	Right-handed 310
Helix 12	12	C	193	195	Right-handed 310
Helix 13	13	C	207	210	Right-handed 310
Helix 14	14	D	87	91	Right-handed 310
Helix 15	15	D	162	164	Right-handed 310
Helix 16	16	D	193	195	Right-handed 310
Helix 17	17	D	207	210	Right-handed 310
Helix 18	18	E	26	30	Right-handed 310
Helix 19	19	E	78	82	Right-handed 310
Helix 20	20	E	120	125	Right-handed alpha
Helix 21	21	E	182	186	Right-handed alpha
Helix 22	22	F	26	30	Right-handed 310
Helix 23	23	F	78	82	Right-handed 310
Helix 24	24	F	120	125	Right-handed alpha
Helix 25	25	F	182	186	Right-handed alpha
Helix 26	26	G	87	91	Right-handed 310
Helix 27	27	G	133	135	Right-handed 310
Helix 28	28	G	162	164	Right-handed 310
Helix 29	29	G	193	195	Right-handed 310
Helix 30	30	G	207	210	Right-handed 310
Helix 31	31	H	26	30	Right-handed 310
Helix 32	32	H	78	82	Right-handed 310
Helix 33	33	H	120	125	Right-handed alpha
Helix 34	34	H	182	186	Right-handed alpha
Helix 35	35	I	436	442	Right-handed 310
Helix 36	36	J	436	442	Right-handed 310
Helix 37	37	K	436	442	Right-handed 310
Helix 38	38	L	436	442	Right-handed 310

There are 44 sheets in PDB entry 4JZO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	32	39	anti-parallel
Strand 5	A	45	52	anti-parallel
Strand 6	A	57	60	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	108	109	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	182	191	anti-parallel
Strand 4	A	169	171	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	182	191	anti-parallel
Strand 4	A	175	176	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	211	216	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	101	105	parallel
Strand 3	B	83	91	anti-parallel
Strand 4	B	33	37	anti-parallel
Strand 5	B	44	47	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	101	105	parallel
Strand 3	B	83	91	anti-parallel
Strand 4	B	94	97	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	61	66	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	128	138	anti-parallel
Strand 3	B	172	181	anti-parallel
Strand 4	B	158	162	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	190	197	anti-parallel
Strand 4	B	204	209	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	45	52	anti-parallel
Strand 6	C	57	60	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	108	109	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	141	151	anti-parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	169	171	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	141	151	anti-parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	175	176	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	201	206	anti-parallel
Strand 3	C	211	216	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	45	52	anti-parallel
Strand 6	D	57	60	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	108	109	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	130	first strand
Strand 2	D	141	151	anti-parallel
Strand 3	D	182	191	anti-parallel
Strand 4	D	169	171	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	130	first strand
Strand 2	D	141	151	anti-parallel
Strand 3	D	182	191	anti-parallel
Strand 4	D	175	176	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	160	first strand
Strand 2	D	201	206	anti-parallel
Strand 3	D	211	216	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	101	105	parallel
Strand 3	E	83	91	anti-parallel
Strand 4	E	33	37	anti-parallel
Strand 5	E	44	47	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	101	105	parallel
Strand 3	E	83	91	anti-parallel
Strand 4	E	94	97	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	23	first strand
Strand 2	E	69	74	anti-parallel
Strand 3	E	61	66	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	117	first strand
Strand 2	E	128	138	anti-parallel
Strand 3	E	172	181	anti-parallel
Strand 4	E	158	162	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	153	first strand
Strand 2	E	143	149	anti-parallel
Strand 3	E	190	197	anti-parallel
Strand 4	E	204	209	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	101	105	parallel
Strand 3	F	83	91	anti-parallel
Strand 4	F	33	37	anti-parallel
Strand 5	F	44	47	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	101	105	parallel
Strand 3	F	83	91	anti-parallel
Strand 4	F	94	97	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	69	74	anti-parallel
Strand 3	F	61	66	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	117	first strand
Strand 2	F	128	138	anti-parallel
Strand 3	F	172	181	anti-parallel
Strand 4	F	158	162	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	153	first strand
Strand 2	F	143	149	anti-parallel
Strand 3	F	190	197	anti-parallel
Strand 4	F	204	209	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	113	117	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	45	52	anti-parallel
Strand 6	G	57	60	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	113	117	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	108	109	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	130	first strand
Strand 2	G	141	151	anti-parallel
Strand 3	G	182	191	anti-parallel
Strand 4	G	169	171	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	138	first strand
Strand 2	G	141	151	anti-parallel
Strand 3	G	182	191	anti-parallel
Strand 4	G	175	176	anti-parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	160	first strand
Strand 2	G	201	206	anti-parallel
Strand 3	G	211	216	anti-parallel

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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	101	105	parallel
Strand 3	H	83	91	anti-parallel
Strand 4	H	33	37	anti-parallel
Strand 5	H	44	47	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	101	105	parallel
Strand 3	H	83	91	anti-parallel
Strand 4	H	94	97	anti-parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	69	74	anti-parallel
Strand 3	H	61	66	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	113	117	first strand
Strand 2	H	128	138	anti-parallel
Strand 3	H	172	181	anti-parallel
Strand 4	H	158	162	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	143	149	anti-parallel
Strand 3	H	190	197	anti-parallel
Strand 4	H	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4JZO

Analysis of interatomic Contacts of Structural Units in PDB entry:
4JZO