Analysis of interatomic Contacts of Structural Units in PDB entry:
4K29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4K29 entry

There are 3 chains in PDB entry 4K29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 270
B
 TYR 3ALA 270
C
 TYR 3ALA 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 4K29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
29 46Right-handed alpha
Helix 3
3
A
66 74Right-handed alpha
Helix 4
4
A
77 98Right-handed alpha
Helix 5
5
A
112 121Right-handed alpha
Helix 6
6
A
135 140Right-handed 310
Helix 7
7
A
147 153Right-handed alpha
Helix 8
8
A
153 164Right-handed alpha
Helix 9
9
A
170 176Right-handed alpha
Helix 10
10
A
184 186Right-handed 310
Helix 11
11
A
187 201Right-handed alpha
Helix 12
12
A
203 221Right-handed alpha
Helix 13
13
A
222 241Right-handed alpha
Helix 14
14
A
242 256Right-handed alpha
Helix 15
15
A
256 267Right-handed alpha
Helix 16
16
B
21 25Right-handed 310
Helix 17
17
B
29 46Right-handed alpha
Helix 18
18
B
66 74Right-handed alpha
Helix 19
19
B
77 98Right-handed alpha
Helix 20
20
B
112 121Right-handed alpha
Helix 21
21
B
135 140Right-handed 310
Helix 22
22
B
147 152Right-handed alpha
Helix 23
23
B
153 164Right-handed alpha
Helix 24
24
B
170 176Right-handed alpha
Helix 25
25
B
184 186Right-handed 310
Helix 26
26
B
187 201Right-handed alpha
Helix 27
27
B
203 221Right-handed alpha
Helix 28
28
B
222 241Right-handed alpha
Helix 29
29
B
242 256Right-handed alpha
Helix 30
30
B
256 267Right-handed alpha
Helix 31
31
C
21 25Right-handed 310
Helix 32
32
C
29 46Right-handed alpha
Helix 33
33
C
66 74Right-handed alpha
Helix 34
34
C
77 98Right-handed alpha
Helix 35
35
C
112 121Right-handed alpha
Helix 36
36
C
135 140Right-handed 310
Helix 37
37
C
147 152Right-handed alpha
Helix 38
38
C
153 164Right-handed alpha
Helix 39
39
C
170 176Right-handed alpha
Helix 40
40
C
184 186Right-handed 310
Helix 41
41
C
187 201Right-handed alpha
Helix 42
42
C
203 221Right-handed alpha
Helix 43
43
C
222 241Right-handed alpha
Helix 44
44
C
242 256Right-handed alpha
Helix 45
45
C
256 267Right-handed alpha
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There are 6 sheets in PDB entry 4K29. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
14 19anti-parallel
Strand 3
A
51 56parallel
Strand 4
A
102 106parallel
Strand 5
A
123 127parallel
Strand 6
A
181 183parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
131 133parallel
Strand 3
A
168 169anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
51 56parallel
Strand 4
B
102 106parallel
Strand 5
B
123 127parallel
Strand 6
B
181 183parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 111first strand
Strand 2
B
131 133parallel
Strand 3
B
168 169anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 11first strand
Strand 2
C
14 19anti-parallel
Strand 3
C
52 56parallel
Strand 4
C
102 106parallel
Strand 5
C
123 127parallel
Strand 6
C
181 183parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 111first strand
Strand 2
C
131 133parallel
Strand 3
C
168 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il